Model info
| Transcription factor | ZSCAN16 | ||||||||
| Model | ZSC16_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 20 | ||||||||
| Quality | D | ||||||||
| Consensus | nvbGTGYTCWGTTAACAhhn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 23 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | unclassified{2.3.3.0} | ||||||||
| HGNC | 20813 | ||||||||
| EntrezGene | 80345 | ||||||||
| UniProt ID | ZSC16_HUMAN | ||||||||
| UniProt AC | Q9H4T2 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5.75 | 3.75 | 9.75 | 3.75 |
| 02 | 9.75 | 3.75 | 6.75 | 2.75 |
| 03 | 0.75 | 2.75 | 16.75 | 2.75 |
| 04 | 3.0 | 0.0 | 20.0 | 0.0 |
| 05 | 0.0 | 1.0 | 3.0 | 19.0 |
| 06 | 1.0 | 0.0 | 22.0 | 0.0 |
| 07 | 1.0 | 8.0 | 1.0 | 13.0 |
| 08 | 0.0 | 0.0 | 1.0 | 22.0 |
| 09 | 1.0 | 20.0 | 0.0 | 2.0 |
| 10 | 6.0 | 0.0 | 2.0 | 15.0 |
| 11 | 3.0 | 0.0 | 20.0 | 0.0 |
| 12 | 0.0 | 1.0 | 2.0 | 20.0 |
| 13 | 1.0 | 1.0 | 1.0 | 20.0 |
| 14 | 19.0 | 3.0 | 1.0 | 0.0 |
| 15 | 22.0 | 0.0 | 1.0 | 0.0 |
| 16 | 0.0 | 20.0 | 1.0 | 2.0 |
| 17 | 18.0 | 0.0 | 2.0 | 3.0 |
| 18 | 6.0 | 11.0 | 2.0 | 4.0 |
| 19 | 4.75 | 3.75 | 2.75 | 11.75 |
| 20 | 8.5 | 2.5 | 3.5 | 8.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | -0.365 | 0.478 | -0.365 |
| 02 | 0.478 | -0.365 | 0.142 | -0.615 |
| 03 | -1.449 | -0.615 | 0.987 | -0.615 |
| 04 | -0.546 | -2.121 | 1.157 | -2.121 |
| 05 | -2.121 | -1.298 | -0.546 | 1.108 |
| 06 | -1.298 | -2.121 | 1.249 | -2.121 |
| 07 | -1.298 | 0.296 | -1.298 | 0.746 |
| 08 | -2.121 | -2.121 | -1.298 | 1.249 |
| 09 | -1.298 | 1.157 | -2.121 | -0.853 |
| 10 | 0.038 | -2.121 | -0.853 | 0.882 |
| 11 | -0.546 | -2.121 | 1.157 | -2.121 |
| 12 | -2.121 | -1.298 | -0.853 | 1.157 |
| 13 | -1.298 | -1.298 | -1.298 | 1.157 |
| 14 | 1.108 | -0.546 | -1.298 | -2.121 |
| 15 | 1.249 | -2.121 | -1.298 | -2.121 |
| 16 | -2.121 | 1.157 | -1.298 | -0.853 |
| 17 | 1.056 | -2.121 | -0.853 | -0.546 |
| 18 | 0.038 | 0.59 | -0.853 | -0.312 |
| 19 | -0.166 | -0.365 | -0.615 | 0.651 |
| 20 | 0.351 | -0.688 | -0.422 | 0.351 |