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HOCOMOCO v10 is outdated. Please switch to the latest HOCOMOCO release using the following link: hocomoco.autosome.org

Tools

Sequence data

Citation:
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
Ivan V. Kulakovskiy; Ilya E. Vorontsov; Ivan S. Yevshin; Anastasiia V. Soboleva; Artem S. Kasianov; Haitham Ashoor; Wail Ba-alawi; Vladimir B. Bajic; Yulia A. Medvedeva; Fedor A. Kolpakov; Vsevolod J. Makeev
Nucl. Acids Res. (04 January 2016) 44 (D1): D116-D125.
doi: 10.1093/nar/gkv1249

TFBS models (Technical notes)

Human Mouse
Mononucleotide Dinucleotide Mononucleotide Dinucleotide
Complete model annotation (including gene id mapping) annotation_HUMAN_mono.tsv annotation_HUMAN_di.tsv annotation_MOUSE_mono.tsv annotation_MOUSE_di.tsv
PWM
One file per matrix
pwm_HUMAN_mono.tar.gz pwm_HUMAN_di.tar.gz pwm_MOUSE_mono.tar.gz pwm_MOUSE_di.tar.gz
Flat file pwms_HUMAN_mono.txt pwms_HUMAN_di.txt pwms_MOUSE_mono.txt pwms_MOUSE_di.txt
PCM One file per matrix
pcm_HUMAN_mono.tar.gz pcm_HUMAN_di.tar.gz pcm_MOUSE_mono.tar.gz pcm_MOUSE_di.tar.gz
Flat file pcms_HUMAN_mono.txt pcms_HUMAN_di.txt pcms_MOUSE_mono.txt pcms_MOUSE_di.txt
Alignments words_HUMAN_mono.tar.gz words_HUMAN_di.tar.gz words_MOUSE_mono.tar.gz words_MOUSE_di.tar.gz
Standard thresholds standard_thresholds_HUMAN_mono.txt standard_thresholds_HUMAN_di.txt standard_thresholds_MOUSE_mono.txt standard_thresholds_MOUSE_di.txt
Threshold to P-value map
thresholds_HUMAN_mono.tar.gz thresholds_HUMAN_di.tar.gz thresholds_MOUSE_mono.tar.gz thresholds_MOUSE_di.tar.gz
Sequence LOGOs logo_HUMAN_mono.tar.gz logo_HUMAN_di.tar.gz logo_MOUSE_mono.tar.gz logo_MOUSE_di.tar.gz
Matrices in other formats JASPAR H10_HUMAN_mono_jaspar_format.txt H10_MOUSE_mono_jaspar_format.txt
MEME H10_HUMAN_mono_meme_format.meme H10_MOUSE_mono_meme_format.meme
TRANSFAC H10_HUMAN_mono_transfac_format.txt H10_MOUSE_mono_transfac_format.txt
HOMER
P-value 0.001
P-value 0.0005
P-value 0.0001
P-value 0.001
P-value 0.0005
P-value 0.0001

See also:

Curation log
Retracted models