Model info
| Transcription factor | ZIC2 | ||||||||
| Model | ZIC2_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Consensus | dKGGdGbKv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 36 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | GLI-like factors{2.3.3.1} | ||||||||
| HGNC | 12873 | ||||||||
| EntrezGene | 7546 | ||||||||
| UniProt ID | ZIC2_HUMAN | ||||||||
| UniProt AC | O95409 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.361 | 1.25 | 17.472 | 8.917 |
| 02 | 2.0 | 2.0 | 28.0 | 4.0 |
| 03 | 1.0 | 3.0 | 29.333 | 2.667 |
| 04 | 3.0 | 2.0 | 29.0 | 2.0 |
| 05 | 7.222 | 3.0 | 6.0 | 19.778 |
| 06 | 5.0 | 1.0 | 29.0 | 1.0 |
| 07 | 2.0 | 4.0 | 26.0 | 4.0 |
| 08 | 2.111 | 0.0 | 7.778 | 26.111 |
| 09 | 5.111 | 17.778 | 8.111 | 5.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.067 | -1.529 | 0.618 | -0.008 |
| 02 | -1.229 | -1.229 | 1.072 | -0.704 |
| 03 | -1.652 | -0.932 | 1.117 | -1.022 |
| 04 | -0.932 | -1.229 | 1.106 | -1.229 |
| 05 | -0.198 | -0.932 | -0.361 | 0.737 |
| 06 | -0.518 | -1.652 | 1.106 | -1.652 |
| 07 | -1.229 | -0.704 | 1.0 | -0.704 |
| 08 | -1.191 | -2.402 | -0.132 | 1.004 |
| 09 | -0.499 | 0.635 | -0.094 | -0.518 |