Model info
| Transcription factor | Vsx2 | ||||||||
| Model | VSX2_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | TAATTAGCnhd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 23 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | VSX{3.1.3.28} | ||||||||
| MGI | 88401 | ||||||||
| EntrezGene | 12677 | ||||||||
| UniProt ID | VSX2_MOUSE | ||||||||
| UniProt AC | Q61412 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | 1.926 | 0.0 | 21.074 |
| 02 | 21.3 | 0.0 | 1.7 | 0.0 |
| 03 | 23.0 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 0.0 | 0.0 | 23.0 |
| 05 | 0.0 | 0.0 | 1.02 | 21.98 |
| 06 | 20.961 | 1.02 | 1.02 | 0.0 |
| 07 | 0.0 | 0.0 | 23.0 | 0.0 |
| 08 | 0.0 | 20.281 | 2.719 | 0.0 |
| 09 | 4.079 | 4.079 | 4.759 | 10.084 |
| 10 | 9.064 | 4.759 | 2.039 | 7.138 |
| 11 | 9.432 | 2.294 | 4.334 | 6.94 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.121 | -0.88 | -2.121 | 1.208 |
| 02 | 1.218 | -2.121 | -0.967 | -2.121 |
| 03 | 1.292 | -2.121 | -2.121 | -2.121 |
| 04 | -2.121 | -2.121 | -2.121 | 1.292 |
| 05 | -2.121 | -2.121 | -1.287 | 1.248 |
| 06 | 1.202 | -1.287 | -1.287 | -2.121 |
| 07 | -2.121 | -2.121 | 1.292 | -2.121 |
| 08 | -2.121 | 1.171 | -0.623 | -2.121 |
| 09 | -0.295 | -0.295 | -0.165 | 0.509 |
| 10 | 0.41 | -0.165 | -0.839 | 0.193 |
| 11 | 0.447 | -0.753 | -0.244 | 0.167 |