Transcription factor | VSX2 | ||||||||
Model | VSX2_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 11 | ||||||||
Quality | D | ||||||||
Consensus | TAATTAGCnhd | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 23 | ||||||||
TF family | Paired-related HD factors{3.1.3} | ||||||||
TF subfamily | VSX{3.1.3.28} | ||||||||
HGNC | 1975 | ||||||||
EntrezGene | 338917 | ||||||||
UniProt ID | VSX2_HUMAN | ||||||||
UniProt AC | P58304 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 0.0 | 1.926 | 0.0 | 21.074 |
02 | 21.3 | 0.0 | 1.7 | 0.0 |
03 | 23.0 | 0.0 | 0.0 | 0.0 |
04 | 0.0 | 0.0 | 0.0 | 23.0 |
05 | 0.0 | 0.0 | 1.02 | 21.98 |
06 | 20.961 | 1.02 | 1.02 | 0.0 |
07 | 0.0 | 0.0 | 23.0 | 0.0 |
08 | 0.0 | 20.281 | 2.719 | 0.0 |
09 | 4.079 | 4.079 | 4.759 | 10.084 |
10 | 9.064 | 4.759 | 2.039 | 7.138 |
11 | 9.432 | 2.294 | 4.334 | 6.94 |
A | C | G | T | |
---|---|---|---|---|
01 | -2.121 | -0.88 | -2.121 | 1.208 |
02 | 1.218 | -2.121 | -0.967 | -2.121 |
03 | 1.292 | -2.121 | -2.121 | -2.121 |
04 | -2.121 | -2.121 | -2.121 | 1.292 |
05 | -2.121 | -2.121 | -1.287 | 1.248 |
06 | 1.202 | -1.287 | -1.287 | -2.121 |
07 | -2.121 | -2.121 | 1.292 | -2.121 |
08 | -2.121 | 1.171 | -0.623 | -2.121 |
09 | -0.295 | -0.295 | -0.165 | 0.509 |
10 | 0.41 | -0.165 | -0.839 | 0.193 |
11 | 0.447 | -0.753 | -0.244 | 0.167 |