Model info
Transcription factorVSX2
ModelVSX2_HUMAN.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length11
Quality
D
ConsensusTAATTAGCnhd
wAUC
Best AUC
Benchmark datasets
Aligned words23
TF familyPaired-related HD factors{3.1.3}
TF subfamilyVSX{3.1.3.28}
HGNC1975
EntrezGene338917
UniProt IDVSX2_HUMAN
UniProt ACP58304
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.5151
0.0005 5.3702
0.0001 7.2004
PCM
ACGT
010.01.9260.021.074
0221.30.01.70.0
0323.00.00.00.0
040.00.00.023.0
050.00.01.0221.98
0620.9611.021.020.0
070.00.023.00.0
080.020.2812.7190.0
094.0794.0794.75910.084
109.0644.7592.0397.138
119.4322.2944.3346.94
PWM
ACGT
01-2.121-0.88-2.1211.208
021.218-2.121-0.967-2.121
031.292-2.121-2.121-2.121
04-2.121-2.121-2.1211.292
05-2.121-2.121-1.2871.248
061.202-1.287-1.287-2.121
07-2.121-2.1211.292-2.121
08-2.1211.171-0.623-2.121
09-0.295-0.295-0.1650.509
100.41-0.165-0.8390.193
110.447-0.753-0.2440.167