Model info
| Transcription factor | Vdr | ||||||||
| Model | VDR_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 16 | ||||||||
| Quality | C | ||||||||
| Consensus | RGGTYAhnRRGKKSRb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 115 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | Vitamin D receptor (NR1I){2.1.2.4} | ||||||||
| MGI | 103076 | ||||||||
| EntrezGene | 22337 | ||||||||
| UniProt ID | VDR_MOUSE | ||||||||
| UniProt AC | P48281 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 41.932 | 2.843 | 66.651 | 3.574 |
| 02 | 8.448 | 2.924 | 102.166 | 1.462 |
| 03 | 0.65 | 4.061 | 84.614 | 25.674 |
| 04 | 5.524 | 4.386 | 8.854 | 96.236 |
| 05 | 3.087 | 83.234 | 10.885 | 17.795 |
| 06 | 100.129 | 3.574 | 6.261 | 5.036 |
| 07 | 39.36 | 19.609 | 18.622 | 37.41 |
| 08 | 23.264 | 35.461 | 35.367 | 20.908 |
| 09 | 30.087 | 5.138 | 70.008 | 9.768 |
| 10 | 59.571 | 4.305 | 48.281 | 2.843 |
| 11 | 8.773 | 3.005 | 101.679 | 1.543 |
| 12 | 1.462 | 0.731 | 41.751 | 71.056 |
| 13 | 12.759 | 7.148 | 15.758 | 79.335 |
| 14 | 6.336 | 80.878 | 14.377 | 13.409 |
| 15 | 71.524 | 12.678 | 20.319 | 10.478 |
| 16 | 17.873 | 47.965 | 21.285 | 27.877 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.365 | -2.005 | 0.818 | -1.839 |
| 02 | -1.134 | -1.986 | 1.239 | -2.425 |
| 03 | -2.791 | -1.741 | 1.053 | -0.108 |
| 04 | -1.496 | -1.681 | -1.092 | 1.18 |
| 05 | -1.947 | 1.037 | -0.908 | -0.456 |
| 06 | 1.219 | -1.839 | -1.391 | -1.571 |
| 07 | 0.303 | -0.364 | -0.413 | 0.254 |
| 08 | -0.202 | 0.202 | 0.2 | -0.304 |
| 09 | 0.044 | -1.555 | 0.866 | -1.005 |
| 10 | 0.708 | -1.696 | 0.502 | -2.005 |
| 11 | -1.101 | -1.966 | 1.234 | -2.395 |
| 12 | -2.425 | -2.748 | 0.361 | 0.881 |
| 13 | -0.764 | -1.279 | -0.569 | 0.989 |
| 14 | -1.381 | 1.008 | -0.654 | -0.718 |
| 15 | 0.887 | -0.77 | -0.331 | -0.943 |
| 16 | -0.452 | 0.496 | -0.287 | -0.03 |