Model info
Transcription factorVDR
ModelVDR_HUMAN.H10MO.S
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length7
Quality
S
ConsensusRRGKTCA
wAUC
0.6840126408737587
Best AUC
0.754583098026904
Benchmark datasets4
Aligned words126
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyVitamin D receptor (NR1I){2.1.2.4}
HGNC12679
EntrezGene7421
UniProt IDVDR_HUMAN
UniProt ACP11473
CommentSecondary motif.
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.0549
0.0005 5.6317
0.0001 7.2716
PCM
ACGT
0131.2786.2471.37911.103
0261.3371.45957.2040.0
030.00.0119.3520.648
040.01.45960.9457.601
057.2140.8115.187106.788
060.0105.16712.5632.27
07109.8520.5476.8652.736
PWM
ACGT
010.04-1.4340.844-0.931
020.695-2.4640.627-3.261
03-3.261-3.2611.352-2.828
04-3.261-2.4640.6890.634
05-1.311-2.743-1.5861.242
06-3.2611.227-0.819-2.197
071.27-2.884-1.353-2.071