Model info
| Transcription factor | VDR | ||||||||
| Model | VDR_HUMAN.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 7 | ||||||||
| Quality | S | ||||||||
| Consensus | RRGKTCA | ||||||||
| wAUC | 0.6840126408737587 | ||||||||
| Best AUC | 0.754583098026904 | ||||||||
| Benchmark datasets | 4 | ||||||||
| Aligned words | 126 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | Vitamin D receptor (NR1I){2.1.2.4} | ||||||||
| HGNC | 12679 | ||||||||
| EntrezGene | 7421 | ||||||||
| UniProt ID | VDR_HUMAN | ||||||||
| UniProt AC | P11473 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 31.278 | 6.24 | 71.379 | 11.103 |
| 02 | 61.337 | 1.459 | 57.204 | 0.0 |
| 03 | 0.0 | 0.0 | 119.352 | 0.648 |
| 04 | 0.0 | 1.459 | 60.94 | 57.601 |
| 05 | 7.214 | 0.811 | 5.187 | 106.788 |
| 06 | 0.0 | 105.167 | 12.563 | 2.27 |
| 07 | 109.852 | 0.547 | 6.865 | 2.736 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.04 | -1.434 | 0.844 | -0.931 |
| 02 | 0.695 | -2.464 | 0.627 | -3.261 |
| 03 | -3.261 | -3.261 | 1.352 | -2.828 |
| 04 | -3.261 | -2.464 | 0.689 | 0.634 |
| 05 | -1.311 | -2.743 | -1.586 | 1.242 |
| 06 | -3.261 | 1.227 | -0.819 | -2.197 |
| 07 | 1.27 | -2.884 | -1.353 | -2.071 |