Model info
Transcription factorVDR
ModelVDR_HUMAN.H10DI.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
OriginChIP-Seq
Model length20
Quality
B
ConsensusndRGGKSAbnRRGKdSRnnn
wAUC
0.8065594918260511
Best AUC
0.9047642709441346
Benchmark datasets4
Aligned words508
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyVitamin D receptor (NR1I){2.1.2.4}
HGNC12679
EntrezGene7421
UniProt IDVDR_HUMAN
UniProt ACP11473
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.4041
0.0005 10.1561
0.0001 13.7861
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0149.1636.09688.34113.33259.79416.70214.61516.61454.7968.80959.70711.20724.2594.58762.129.858
0296.2841.85686.2083.66524.221.8769.1790.918117.2810.969106.5320.017.720.87830.5241.888
0335.3361.303206.60512.2614.5420.01.0380.020.840.0204.1157.4880.00.06.4710.0
043.9922.81951.0432.8651.3030.00.00.06.67425.392331.42254.7411.8370.014.8323.081
050.00.02.9510.8561.0081.8712.68522.64721.28346.5875.878253.5572.7265.586.35946.022
063.5816.8064.6310.04.64240.4171.9637.0092.71255.80720.9238.433.073233.84466.30729.857
0711.220.00.02.786297.7157.8214.24527.09566.0991.84116.1439.74129.9021.9139.2554.226
0871.596128.841145.03159.4682.864.6950.04.0182.71720.5895.04311.2942.78910.00824.0526.999
0915.45713.52223.19927.78461.54924.18713.48464.91441.00832.60963.55736.95314.11820.11420.62626.92
1023.8512.42594.8561.00148.50912.43125.2994.19213.24313.23991.5532.83112.7570.923139.3593.532
1139.7264.14452.4812.00931.5640.8524.7141.888182.6326.936155.7495.754.6940.9235.9390.0
1213.8253.781234.2696.7424.9390.07.9170.015.1416.088185.10712.5481.7970.07.8490.0
131.8330.87228.6344.3630.00.01.8568.01310.22210.085201.869212.9650.03.8368.8416.612
143.9840.8592.754.4611.7660.8590.83111.33849.72418.15674.90298.41819.511.71245.298155.442
1510.00733.54926.7954.6233.13920.4922.3345.62213.58970.67229.04310.4774.461163.41851.07750.702
1613.864.9389.662.738217.09215.87229.5425.62765.6547.76930.3465.48131.3365.97630.2343.879
1773.85769.18895.14789.7513.7777.9470.96111.8716.24818.35927.93937.2346.61613.5636.58410.961
1831.86710.8957.46610.27539.88923.06115.16530.94237.17323.21344.54325.70116.73523.29566.03743.747
1922.3827.47349.15426.65714.87539.4386.2519.89743.17935.63170.52933.8718.030.60542.34729.714
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.449-1.5851.031-0.8350.643-0.616-0.746-0.6210.556-1.2350.642-1.004-0.25-1.850.681-1.127
021.117-2.6461.007-2.055-0.251-2.637-1.196-3.1871.314-3.1491.218-4.4-0.558-3.218-0.023-2.632
030.121-2.9291.878-0.917-1.859-4.4-3.099-4.4-0.399-4.41.866-1.39-4.4-4.4-1.529-4.4
04-1.977-2.2890.486-2.275-2.929-4.4-4.4-4.4-1.5-0.2052.350.555-2.654-4.4-0.732-2.211
05-4.4-4.4-2.249-1.034-3.12-2.639-2.332-0.317-0.3780.3950.882.083-2.318-1.668-1.5450.383
06-2.076-0.61-1.841-4.4-1.8390.254-2.6-1.453-2.3230.574-0.395-1.278-2.2132.0020.746-0.045
07-1.003-4.4-4.4-2.2992.243-1.349-0.771-0.1410.743-2.653-0.649-1.139-0.044-2.621-1.188-1.925
080.8221.4071.5250.638-2.276-1.828-4.4-1.971-2.321-0.411-1.762-0.996-2.298-1.113-0.258-1.455
09-0.691-0.822-0.294-0.1160.672-0.253-0.8240.7250.2690.0420.7040.166-0.78-0.434-0.409-0.147
10-0.266-0.9041.102-3.1260.435-0.903-0.208-1.932-0.842-0.8421.067-2.285-0.878-3.1831.485-2.088
110.237-1.9430.513-2.580.01-3.239-1.825-2.6321.755-1.4631.596-1.64-1.829-3.183-1.609-4.4
12-0.8-2.0272.004-1.49-1.782-4.4-1.338-4.4-0.712-1.5861.769-0.894-2.673-4.4-1.346-4.4
13-2.656-3.223-0.086-1.896-4.4-4.4-2.646-1.326-1.093-1.1061.8551.909-4.4-2.013-1.232-1.508
14-1.979-3.233-2.311-1.875-2.687-3.233-3.256-0.9930.46-0.5340.8671.139-0.464-0.9610.3671.594
15-1.1130.07-0.152-1.843-2.194-0.416-2.453-1.661-0.8170.809-0.072-1.069-1.8761.6440.4870.479
16-0.798-1.782-1.147-2.3151.928-0.666-0.056-0.1960.736-1.355-0.029-1.6850.003-1.604-0.033-2.003
170.8530.7881.1051.047-0.804-1.334-3.155-0.948-0.643-0.523-0.1110.173-1.508-0.819-1.512-1.025
180.019-1.0310.604-1.0880.241-0.3-0.71-0.010.172-0.2930.351-0.193-0.614-0.290.7420.333
19-0.329-0.1270.448-0.157-0.7290.23-1.561-0.4440.320.130.8070.08-1.328-0.0210.301-0.05