Model info
| Transcription factor | VAX2 | ||||||||
| Model | VAX2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Consensus | YvYTAATTAvbhhhnh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 51 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | VAX{3.1.2.22} | ||||||||
| HGNC | 12661 | ||||||||
| EntrezGene | 25806 | ||||||||
| UniProt ID | VAX2_HUMAN | ||||||||
| UniProt AC | Q9UIW0 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.0 | 29.0 | 7.0 | 12.0 |
| 02 | 25.25 | 10.25 | 11.25 | 4.25 |
| 03 | 0.5 | 32.5 | 5.5 | 12.5 |
| 04 | 1.0 | 2.0 | 0.0 | 48.0 |
| 05 | 49.0 | 1.0 | 0.0 | 1.0 |
| 06 | 50.0 | 0.0 | 1.0 | 0.0 |
| 07 | 1.0 | 0.0 | 0.0 | 50.0 |
| 08 | 0.0 | 1.0 | 11.0 | 39.0 |
| 09 | 44.0 | 0.0 | 7.0 | 0.0 |
| 10 | 10.0 | 19.0 | 15.0 | 7.0 |
| 11 | 4.0 | 25.0 | 15.0 | 7.0 |
| 12 | 8.0 | 25.0 | 5.0 | 13.0 |
| 13 | 9.75 | 10.75 | 3.75 | 26.75 |
| 14 | 21.25 | 9.25 | 4.25 | 16.25 |
| 15 | 17.75 | 6.75 | 8.75 | 17.75 |
| 16 | 16.5 | 9.5 | 7.5 | 17.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.238 | 0.781 | -0.542 | -0.056 |
| 02 | 0.647 | -0.201 | -0.116 | -0.965 |
| 03 | -2.226 | 0.891 | -0.751 | -0.018 |
| 04 | -1.935 | -1.527 | -2.637 | 1.272 |
| 05 | 1.292 | -1.935 | -2.637 | -1.935 |
| 06 | 1.312 | -2.637 | -1.935 | -2.637 |
| 07 | -1.935 | -2.637 | -2.637 | 1.312 |
| 08 | -2.637 | -1.935 | -0.136 | 1.069 |
| 09 | 1.186 | -2.637 | -0.542 | -2.637 |
| 10 | -0.223 | 0.375 | 0.152 | -0.542 |
| 11 | -1.014 | 0.638 | 0.152 | -0.542 |
| 12 | -0.424 | 0.638 | -0.831 | 0.018 |
| 13 | -0.246 | -0.157 | -1.065 | 0.703 |
| 14 | 0.482 | -0.294 | -0.965 | 0.227 |
| 15 | 0.31 | -0.574 | -0.344 | 0.31 |
| 16 | 0.241 | -0.27 | -0.482 | 0.297 |