Model info
| Transcription factor | Usf2 | ||||||||
| Model | USF2_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Consensus | dGTCACGTGvbbv | ||||||||
| wAUC | 0.9798761500386943 | ||||||||
| Best AUC | 0.9890098252519984 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 324 | ||||||||
| TF family | bHLH-ZIP factors{1.2.6} | ||||||||
| TF subfamily | USF factors{1.2.6.2} | ||||||||
| MGI | 99961 | ||||||||
| EntrezGene | 22282 | ||||||||
| UniProt ID | USF2_MOUSE | ||||||||
| UniProt AC | Q64705 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 73.902 | 34.443 | 141.296 | 69.359 |
| 02 | 32.719 | 4.016 | 281.215 | 1.05 |
| 03 | 4.845 | 1.598 | 3.772 | 308.785 |
| 04 | 0.0 | 316.666 | 0.737 | 1.596 |
| 05 | 316.219 | 0.896 | 0.0 | 1.885 |
| 06 | 1.946 | 289.799 | 7.174 | 20.081 |
| 07 | 28.889 | 0.0 | 289.365 | 0.746 |
| 08 | 0.856 | 0.0 | 0.821 | 317.323 |
| 09 | 0.0 | 0.0 | 317.919 | 1.081 |
| 10 | 149.46 | 39.804 | 106.747 | 22.989 |
| 11 | 12.443 | 142.192 | 71.61 | 92.755 |
| 12 | 24.534 | 146.945 | 100.562 | 46.958 |
| 13 | 61.543 | 125.125 | 91.662 | 40.67 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.075 | -0.817 | 0.564 | -0.137 |
| 02 | -0.866 | -2.7 | 1.247 | -3.484 |
| 03 | -2.558 | -3.285 | -2.746 | 1.34 |
| 04 | -4.031 | 1.366 | -3.618 | -3.286 |
| 05 | 1.364 | -3.548 | -4.031 | -3.195 |
| 06 | -3.177 | 1.277 | -2.243 | -1.328 |
| 07 | -0.985 | -4.031 | 1.276 | -3.614 |
| 08 | -3.565 | -4.031 | -3.581 | 1.368 |
| 09 | -4.031 | -4.031 | 1.37 | -3.472 |
| 10 | 0.62 | -0.677 | 0.287 | -1.201 |
| 11 | -1.766 | 0.57 | -0.106 | 0.149 |
| 12 | -1.14 | 0.603 | 0.228 | -0.517 |
| 13 | -0.254 | 0.444 | 0.137 | -0.656 |