Model info
| Transcription factor | USF2 | ||||||||
| Model | USF2_HUMAN.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 23 | ||||||||
| Quality | A | ||||||||
| Consensus | nbRbCACGTGAYbbnvnbnbvbb | ||||||||
| wAUC | 0.9757007065341066 | ||||||||
| Best AUC | 0.9837375700333887 | ||||||||
| Benchmark datasets | 5 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | bHLH-ZIP factors{1.2.6} | ||||||||
| TF subfamily | USF factors{1.2.6.2} | ||||||||
| HGNC | 12594 | ||||||||
| EntrezGene | 7392 | ||||||||
| UniProt ID | USF2_HUMAN | ||||||||
| UniProt AC | Q15853 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 21.65 | 7.345 | 63.365 | 12.533 | 21.453 | 17.069 | 60.058 | 24.416 | 11.78 | 44.911 | 63.234 | 18.128 | 8.9 | 20.586 | 94.633 | 9.941 |
| 02 | 18.63 | 4.731 | 37.516 | 2.906 | 32.502 | 12.175 | 31.261 | 13.971 | 78.885 | 20.905 | 172.24 | 9.258 | 16.295 | 6.943 | 40.068 | 1.711 |
| 03 | 18.143 | 51.969 | 17.927 | 58.274 | 3.01 | 27.557 | 2.87 | 11.318 | 21.182 | 80.073 | 41.875 | 137.957 | 3.699 | 14.953 | 6.092 | 3.101 |
| 04 | 0.0 | 46.034 | 0.0 | 0.0 | 1.788 | 171.79 | 0.0 | 0.975 | 0.0 | 68.764 | 0.0 | 0.0 | 0.0 | 210.65 | 0.0 | 0.0 |
| 05 | 1.788 | 0.0 | 0.0 | 0.0 | 490.743 | 0.0 | 4.63 | 1.865 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.975 | 0.0 |
| 06 | 0.0 | 378.364 | 13.0 | 101.168 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 5.604 | 0.0 | 0.0 | 0.0 | 1.865 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 0.0 | 12.304 | 11.945 | 361.583 | 0.0 | 0.0 | 1.744 | 11.255 | 0.0 | 0.953 | 0.0 | 100.214 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 13.257 | 0.0 | 0.0 | 0.0 | 13.69 | 0.0 | 0.0 | 0.886 | 472.167 | 0.0 | 0.0 | 0.0 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.886 | 0.0 | 0.0 | 0.0 | 499.114 | 0.0 |
| 10 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 397.385 | 37.196 | 62.82 | 2.599 | 0.0 | 0.0 | 0.0 | 0.0 |
| 11 | 4.804 | 317.882 | 34.358 | 40.341 | 4.752 | 14.558 | 2.999 | 14.888 | 0.967 | 16.209 | 24.477 | 21.167 | 0.0 | 1.729 | 0.0 | 0.87 |
| 12 | 0.0 | 6.524 | 3.067 | 0.932 | 44.23 | 134.78 | 41.639 | 129.729 | 4.61 | 28.355 | 18.738 | 10.131 | 9.457 | 22.499 | 35.426 | 9.884 |
| 13 | 0.964 | 23.142 | 24.742 | 9.449 | 50.534 | 71.222 | 31.678 | 38.723 | 10.462 | 36.224 | 40.461 | 11.723 | 18.707 | 49.35 | 54.662 | 27.956 |
| 14 | 16.536 | 29.483 | 27.942 | 6.706 | 60.202 | 48.061 | 32.37 | 39.304 | 25.12 | 48.733 | 61.799 | 15.892 | 7.23 | 21.903 | 45.419 | 13.299 |
| 15 | 7.849 | 28.065 | 51.8 | 21.374 | 40.752 | 47.479 | 31.006 | 28.943 | 32.056 | 58.317 | 62.996 | 14.161 | 3.962 | 28.45 | 35.918 | 6.871 |
| 16 | 18.602 | 11.261 | 27.616 | 27.14 | 35.366 | 48.872 | 36.524 | 41.55 | 38.931 | 44.1 | 57.066 | 41.623 | 1.681 | 15.744 | 26.524 | 27.4 |
| 17 | 20.734 | 34.698 | 34.423 | 4.724 | 13.554 | 48.505 | 25.125 | 32.792 | 31.693 | 48.908 | 35.986 | 31.144 | 1.757 | 54.043 | 40.876 | 41.037 |
| 18 | 7.354 | 15.266 | 30.308 | 14.808 | 36.994 | 44.606 | 38.714 | 65.842 | 25.153 | 41.815 | 40.799 | 28.644 | 9.513 | 25.803 | 40.232 | 34.15 |
| 19 | 9.554 | 15.159 | 43.096 | 11.205 | 25.705 | 43.411 | 31.724 | 26.65 | 25.529 | 33.362 | 59.039 | 32.123 | 18.775 | 29.001 | 70.338 | 25.33 |
| 20 | 25.812 | 19.89 | 28.646 | 5.214 | 36.645 | 39.364 | 29.302 | 15.622 | 49.244 | 49.637 | 81.572 | 23.745 | 15.817 | 25.019 | 38.514 | 15.956 |
| 21 | 10.986 | 46.923 | 60.174 | 9.436 | 20.282 | 51.859 | 29.524 | 32.245 | 18.233 | 74.379 | 76.355 | 9.068 | 7.102 | 21.439 | 22.84 | 9.157 |
| 22 | 12.409 | 21.893 | 15.971 | 6.329 | 35.842 | 81.765 | 30.17 | 46.823 | 25.793 | 91.878 | 42.389 | 28.834 | 6.798 | 18.486 | 21.346 | 13.277 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -0.362 | -1.409 | 0.701 | -0.895 | -0.371 | -0.595 | 0.647 | -0.243 | -0.955 | 0.359 | 0.699 | -0.536 | -1.226 | -0.411 | 1.1 | -1.119 |
| 02 | -0.509 | -1.821 | 0.181 | -2.262 | 0.039 | -0.924 | 0.0 | -0.79 | 0.919 | -0.396 | 1.697 | -1.188 | -0.64 | -1.462 | 0.246 | -2.713 |
| 03 | -0.535 | 0.504 | -0.547 | 0.617 | -2.231 | -0.124 | -2.273 | -0.994 | -0.383 | 0.933 | 0.29 | 1.475 | -2.046 | -0.724 | -1.586 | -2.205 |
| 04 | -4.4 | 0.383 | -4.4 | -4.4 | -2.677 | 1.694 | -4.4 | -3.145 | -4.4 | 0.782 | -4.4 | -4.4 | -4.4 | 1.898 | -4.4 | -4.4 |
| 05 | -2.677 | -4.4 | -4.4 | -4.4 | 2.742 | -4.4 | -1.841 | -2.642 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -3.145 | -4.4 |
| 06 | -4.4 | 2.483 | -0.86 | 1.166 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -1.664 | -4.4 | -4.4 | -4.4 | -2.642 | -4.4 | -4.4 |
| 07 | -4.4 | -4.4 | -4.4 | -4.4 | -0.913 | -0.942 | 2.437 | -4.4 | -4.4 | -2.697 | -1.0 | -4.4 | -3.16 | -4.4 | 1.157 | -4.4 |
| 08 | -4.4 | -4.4 | -4.4 | -0.841 | -4.4 | -4.4 | -4.4 | -0.81 | -4.4 | -4.4 | -3.212 | 2.704 | -4.4 | -4.4 | -4.4 | -4.4 |
| 09 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -3.212 | -4.4 | -4.4 | -4.4 | 2.759 | -4.4 |
| 10 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.532 | 0.172 | 0.692 | -2.36 | -4.4 | -4.4 | -4.4 | -4.4 |
| 11 | -1.807 | 2.309 | 0.094 | 0.253 | -1.817 | -0.75 | -2.234 | -0.728 | -3.15 | -0.645 | -0.241 | -0.384 | -4.4 | -2.704 | -4.4 | -3.225 |
| 12 | -4.4 | -1.521 | -2.214 | -3.177 | 0.344 | 1.452 | 0.284 | 1.414 | -1.845 | -0.096 | -0.503 | -1.101 | -1.167 | -0.324 | 0.124 | -1.125 |
| 13 | -3.153 | -0.296 | -0.23 | -1.168 | 0.476 | 0.817 | 0.013 | 0.212 | -1.07 | 0.146 | 0.256 | -0.96 | -0.505 | 0.452 | 0.554 | -0.11 |
| 14 | -0.626 | -0.057 | -0.11 | -1.495 | 0.65 | 0.426 | 0.035 | 0.227 | -0.215 | 0.44 | 0.676 | -0.664 | -1.424 | -0.35 | 0.37 | -0.838 |
| 15 | -1.346 | -0.106 | 0.5 | -0.374 | 0.263 | 0.414 | -0.008 | -0.076 | 0.025 | 0.618 | 0.695 | -0.777 | -1.984 | -0.093 | 0.138 | -1.472 |
| 16 | -0.51 | -0.999 | -0.122 | -0.139 | 0.122 | 0.443 | 0.154 | 0.282 | 0.217 | 0.341 | 0.597 | 0.284 | -2.727 | -0.674 | -0.162 | -0.13 |
| 17 | -0.404 | 0.103 | 0.096 | -1.823 | -0.819 | 0.435 | -0.215 | 0.048 | 0.014 | 0.443 | 0.139 | -0.003 | -2.691 | 0.543 | 0.266 | 0.27 |
| 18 | -1.408 | -0.704 | -0.03 | -0.733 | 0.167 | 0.352 | 0.212 | 0.739 | -0.214 | 0.288 | 0.264 | -0.086 | -1.162 | -0.189 | 0.25 | 0.088 |
| 19 | -1.158 | -0.71 | 0.318 | -1.004 | -0.193 | 0.325 | 0.015 | -0.157 | -0.199 | 0.065 | 0.63 | 0.027 | -0.501 | -0.074 | 0.804 | -0.207 |
| 20 | -0.189 | -0.445 | -0.086 | -1.731 | 0.157 | 0.228 | -0.064 | -0.681 | 0.45 | 0.458 | 0.952 | -0.271 | -0.669 | -0.219 | 0.207 | -0.66 |
| 21 | -1.023 | 0.402 | 0.649 | -1.17 | -0.426 | 0.502 | -0.056 | 0.031 | -0.53 | 0.86 | 0.886 | -1.208 | -1.441 | -0.371 | -0.309 | -1.198 |
| 22 | -0.905 | -0.351 | -0.66 | -1.55 | 0.136 | 0.954 | -0.035 | 0.4 | -0.189 | 1.07 | 0.302 | -0.079 | -1.482 | -0.517 | -0.375 | -0.84 |