Model info
| Transcription factor | Usf1 | ||||||||
| Model | USF1_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Consensus | RGTCACGTGv | ||||||||
| wAUC | 0.9807281325118212 | ||||||||
| Best AUC | 0.9853376601206956 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 2294 | ||||||||
| TF family | bHLH-ZIP factors{1.2.6} | ||||||||
| TF subfamily | USF factors{1.2.6.2} | ||||||||
| MGI | 99542 | ||||||||
| EntrezGene | 22278 | ||||||||
| UniProt ID | USF1_MOUSE | ||||||||
| UniProt AC | Q61069 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 398.814 | 195.522 | 1008.166 | 128.305 |
| 02 | 281.652 | 8.3 | 1440.854 | 0.0 |
| 03 | 30.174 | 191.175 | 41.223 | 1468.235 |
| 04 | 0.0 | 1727.649 | 3.157 | 0.0 |
| 05 | 1730.31 | 0.496 | 0.0 | 0.0 |
| 06 | 4.059 | 1623.109 | 40.962 | 62.677 |
| 07 | 146.948 | 9.302 | 1574.557 | 0.0 |
| 08 | 8.15 | 4.526 | 8.144 | 1709.987 |
| 09 | 0.0 | 0.0 | 1730.806 | 0.0 |
| 10 | 626.325 | 229.976 | 719.847 | 154.658 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.081 | -0.789 | 0.843 | -1.206 |
| 02 | -0.427 | -3.755 | 1.2 | -5.452 |
| 03 | -2.607 | -0.811 | -2.311 | 1.219 |
| 04 | -5.452 | 1.381 | -4.461 | -5.452 |
| 05 | 1.383 | -5.215 | -5.452 | -5.452 |
| 06 | -4.296 | 1.319 | -2.317 | -1.907 |
| 07 | -1.072 | -3.661 | 1.289 | -5.452 |
| 08 | -3.77 | -4.22 | -3.771 | 1.371 |
| 09 | -5.452 | -5.452 | 1.383 | -5.452 |
| 10 | 0.368 | -0.628 | 0.507 | -1.021 |