Model info
| Transcription factor | Twist1 | ||||||||
| Model | TWST1_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Consensus | hMCCAGGTGG | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 5 | ||||||||
| TF family | Tal-related factors{1.2.3} | ||||||||
| TF subfamily | Twist-like factors{1.2.3.2} | ||||||||
| MGI | 98872 | ||||||||
| EntrezGene | 22160 | ||||||||
| UniProt ID | TWST1_MOUSE | ||||||||
| UniProt AC | P26687 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.195 | 2.195 | 0.0 | 0.61 |
| 02 | 1.22 | 2.683 | 1.098 | 0.0 |
| 03 | 0.0 | 3.902 | 1.098 | 0.0 |
| 04 | 0.0 | 5.0 | 0.0 | 0.0 |
| 05 | 5.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 3.78 | 1.22 |
| 07 | 0.0 | 0.0 | 5.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 5.0 |
| 09 | 0.0 | 0.0 | 5.0 | 0.0 |
| 10 | 0.0 | 0.0 | 2.927 | 2.073 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.452 | 0.452 | -1.413 | -0.49 |
| 02 | -0.019 | 0.624 | -0.097 | -1.413 |
| 03 | -1.413 | 0.958 | -0.097 | -1.413 |
| 04 | -1.413 | 1.185 | -1.413 | -1.413 |
| 05 | 1.185 | -1.413 | -1.413 | -1.413 |
| 06 | -1.413 | -1.413 | 0.929 | -0.019 |
| 07 | -1.413 | -1.413 | 1.185 | -1.413 |
| 08 | -1.413 | -1.413 | -1.413 | 1.185 |
| 09 | -1.413 | -1.413 | 1.185 | -1.413 |
| 10 | -1.413 | -1.413 | 0.701 | 0.404 |