Model info
| Transcription factor | Thrb | ||||||||
| Model | THB_MOUSE.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | S | ||||||||
| Consensus | bvTSAGGTCA | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 58 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | Thyroid hormone receptors (NR1A){2.1.2.2} | ||||||||
| MGI | 98743 | ||||||||
| EntrezGene | 21834 | ||||||||
| UniProt ID | THB_MOUSE | ||||||||
| UniProt AC | P37242 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.569 | 15.821 | 22.244 | 10.111 |
| 02 | 8.208 | 11.895 | 26.883 | 4.758 |
| 03 | 0.0 | 2.141 | 10.111 | 39.492 |
| 04 | 3.212 | 29.262 | 18.2 | 1.071 |
| 05 | 50.792 | 0.0 | 0.952 | 0.0 |
| 06 | 0.0 | 4.877 | 44.131 | 2.736 |
| 07 | 1.19 | 3.925 | 45.558 | 1.071 |
| 08 | 9.992 | 0.0 | 0.0 | 41.752 |
| 09 | 1.071 | 49.603 | 1.071 | 0.0 |
| 10 | 44.904 | 5.65 | 0.297 | 0.892 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.117 | 0.188 | 0.512 | -0.227 |
| 02 | -0.415 | -0.078 | 0.694 | -0.885 |
| 03 | -2.647 | -1.493 | -0.227 | 1.067 |
| 04 | -1.199 | 0.776 | 0.321 | -1.912 |
| 05 | 1.313 | -2.647 | -1.972 | -2.647 |
| 06 | -2.647 | -0.865 | 1.176 | -1.319 |
| 07 | -1.856 | -1.042 | 1.207 | -1.912 |
| 08 | -0.238 | -2.647 | -2.647 | 1.122 |
| 09 | -1.912 | 1.29 | -1.912 | -2.647 |
| 10 | 1.193 | -0.741 | -2.384 | -2.003 |