Model info
| Transcription factor | THRA | ||||||||
| Model | THA_HUMAN.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | S | ||||||||
| Consensus | nYvAGGTCAv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 76 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1){2.1.2} | ||||||||
| TF subfamily | Thyroid hormone receptors (NR1A){2.1.2.2} | ||||||||
| HGNC | 11796 | ||||||||
| EntrezGene | 7067 | ||||||||
| UniProt ID | THA_HUMAN | ||||||||
| UniProt AC | P10827 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6.643 | 26.239 | 14.393 | 26.239 |
| 02 | 6.421 | 10.739 | 5.757 | 50.596 |
| 03 | 9.632 | 36.979 | 20.704 | 6.2 |
| 04 | 57.904 | 3.432 | 12.179 | 0.0 |
| 05 | 0.0 | 0.554 | 67.204 | 5.757 |
| 06 | 0.0 | 0.0 | 68.532 | 4.982 |
| 07 | 4.982 | 0.0 | 0.664 | 67.868 |
| 08 | 0.0 | 68.311 | 5.204 | 0.0 |
| 09 | 68.864 | 3.875 | 0.775 | 0.0 |
| 10 | 10.739 | 21.589 | 30.557 | 10.629 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.925 | 0.339 | -0.229 | 0.339 |
| 02 | -0.954 | -0.499 | -1.046 | 0.977 |
| 03 | -0.597 | 0.671 | 0.113 | -0.984 |
| 04 | 1.109 | -1.462 | -0.384 | -2.896 |
| 05 | -2.896 | -2.481 | 1.256 | -1.046 |
| 06 | -2.896 | -2.896 | 1.275 | -1.167 |
| 07 | -1.167 | -2.896 | -2.415 | 1.265 |
| 08 | -2.896 | 1.272 | -1.131 | -2.896 |
| 09 | 1.28 | -1.369 | -2.353 | -2.896 |
| 10 | -0.499 | 0.153 | 0.486 | -0.508 |