Model info
| Transcription factor | Tgif1 | ||||||||
| Model | TGIF1_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Consensus | vnvnTSWCAnnTSMCn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 14 | ||||||||
| TF family | TALE-type homeo domain factors{3.1.4} | ||||||||
| TF subfamily | TGIF{3.1.4.6} | ||||||||
| MGI | 1194497 | ||||||||
| EntrezGene | 21815 | ||||||||
| UniProt ID | TGIF1_MOUSE | ||||||||
| UniProt AC | P70284 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.455 | 5.539 | 2.468 | 1.481 |
| 02 | 6.032 | 1.974 | 1.974 | 2.961 |
| 03 | 1.974 | 1.974 | 8.006 | 0.987 |
| 04 | 1.974 | 3.948 | 5.045 | 1.974 |
| 05 | 0.0 | 3.948 | 0.0 | 8.994 |
| 06 | 1.974 | 2.084 | 8.884 | 0.0 |
| 07 | 8.006 | 1.974 | 0.0 | 2.961 |
| 08 | 0.0 | 9.981 | 1.974 | 0.987 |
| 09 | 9.981 | 0.0 | 0.0 | 2.961 |
| 10 | 1.974 | 6.91 | 2.084 | 1.974 |
| 11 | 1.974 | 6.91 | 2.084 | 1.974 |
| 12 | 1.974 | 0.0 | 0.987 | 9.981 |
| 13 | 0.987 | 4.058 | 7.897 | 0.0 |
| 14 | 8.006 | 3.948 | 0.0 | 0.987 |
| 15 | 0.987 | 10.968 | 0.0 | 0.987 |
| 16 | 6.526 | 2.468 | 1.481 | 2.468 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.055 | 0.466 | -0.221 | -0.603 |
| 02 | 0.543 | -0.394 | -0.394 | -0.073 |
| 03 | -0.394 | -0.394 | 0.802 | -0.868 |
| 04 | -0.394 | 0.169 | 0.383 | -0.394 |
| 05 | -1.801 | 0.169 | -1.801 | 0.911 |
| 06 | -0.394 | -0.353 | 0.899 | -1.801 |
| 07 | 0.802 | -0.394 | -1.801 | -0.073 |
| 08 | -1.801 | 1.008 | -0.394 | -0.868 |
| 09 | 1.008 | -1.801 | -1.801 | -0.073 |
| 10 | -0.394 | 0.667 | -0.353 | -0.394 |
| 11 | -0.394 | 0.667 | -0.353 | -0.394 |
| 12 | -0.394 | -1.801 | -0.868 | 1.008 |
| 13 | -0.868 | 0.192 | 0.79 | -1.801 |
| 14 | 0.802 | 0.169 | -1.801 | -0.868 |
| 15 | -0.868 | 1.097 | -1.801 | -0.868 |
| 16 | 0.615 | -0.221 | -0.603 | -0.221 |