Model info
| Transcription factor | Rela | ||||||||
| Model | TF65_MOUSE.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | S | ||||||||
| Consensus | KGGRvTTTCCv | ||||||||
| wAUC | 0.7793487326912545 | ||||||||
| Best AUC | 0.7793487326912545 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 2165 | ||||||||
| TF family | NF-kappaB-related factors{6.1.1} | ||||||||
| TF subfamily | NF-kappaB p65 subunit-like factors{6.1.1.2} | ||||||||
| MGI | 103290 | ||||||||
| EntrezGene | 19697 | ||||||||
| UniProt ID | TF65_MOUSE | ||||||||
| UniProt AC | Q04207 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 124.1 | 228.472 | 1456.989 | 309.665 |
| 02 | 23.555 | 0.519 | 2039.976 | 55.175 |
| 03 | 5.73 | 13.572 | 2049.963 | 49.959 |
| 04 | 1281.225 | 19.154 | 770.163 | 48.683 |
| 05 | 1042.69 | 588.41 | 267.513 | 220.611 |
| 06 | 0.0 | 44.498 | 27.703 | 2047.024 |
| 07 | 10.065 | 89.137 | 62.41 | 1957.613 |
| 08 | 17.385 | 518.205 | 32.83 | 1550.805 |
| 09 | 41.284 | 2005.497 | 7.111 | 65.333 |
| 10 | 59.636 | 1991.837 | 10.281 | 57.47 |
| 11 | 567.553 | 995.663 | 288.583 | 267.426 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.44 | -0.836 | 1.009 | -0.534 |
| 02 | -3.039 | -5.387 | 1.346 | -2.231 |
| 03 | -4.242 | -3.536 | 1.35 | -2.327 |
| 04 | 0.881 | -3.228 | 0.373 | -2.352 |
| 05 | 0.675 | 0.105 | -0.68 | -0.871 |
| 06 | -5.627 | -2.439 | -2.888 | 1.349 |
| 07 | -3.793 | -1.765 | -2.112 | 1.304 |
| 08 | -3.316 | -0.022 | -2.728 | 1.072 |
| 09 | -2.51 | 1.328 | -4.076 | -2.068 |
| 10 | -2.156 | 1.322 | -3.775 | -2.192 |
| 11 | 0.069 | 0.629 | -0.605 | -0.68 |