Model info
| Transcription factor | RELA | ||||||||
| Model | TF65_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Consensus | GGGRhTTTCCh | ||||||||
| wAUC | 0.873308772705505 | ||||||||
| Best AUC | 0.93582696224696 | ||||||||
| Benchmark datasets | 22 | ||||||||
| Aligned words | 498 | ||||||||
| TF family | NF-kappaB-related factors{6.1.1} | ||||||||
| TF subfamily | NF-kappaB p65 subunit-like factors{6.1.1.2} | ||||||||
| HGNC | 9955 | ||||||||
| EntrezGene | 5970 | ||||||||
| UniProt ID | TF65_HUMAN | ||||||||
| UniProt AC | Q04206 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 7.756 | 13.585 | 416.183 | 60.477 |
| 02 | 2.066 | 0.998 | 493.026 | 1.91 |
| 03 | 2.794 | 0.0 | 469.411 | 25.795 |
| 04 | 225.88 | 10.771 | 240.887 | 20.463 |
| 05 | 196.218 | 174.983 | 44.347 | 82.453 |
| 06 | 0.938 | 1.943 | 0.981 | 494.138 |
| 07 | 0.0 | 4.867 | 10.116 | 483.018 |
| 08 | 0.993 | 162.877 | 5.047 | 329.083 |
| 09 | 6.934 | 478.403 | 0.941 | 11.723 |
| 10 | 11.061 | 452.002 | 2.937 | 31.999 |
| 11 | 144.559 | 259.25 | 45.183 | 49.008 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.606 | -2.12 | 1.198 | -0.709 |
| 02 | -3.551 | -3.9 | 1.367 | -3.595 |
| 03 | -3.367 | -4.397 | 1.318 | -1.528 |
| 04 | 0.59 | -2.325 | 0.654 | -1.745 |
| 05 | 0.45 | 0.337 | -1.01 | -0.406 |
| 06 | -3.924 | -3.585 | -3.907 | 1.369 |
| 07 | -4.397 | -2.977 | -2.38 | 1.347 |
| 08 | -3.902 | 0.266 | -2.95 | 0.964 |
| 09 | -2.698 | 1.337 | -3.923 | -2.251 |
| 10 | -2.302 | 1.28 | -3.335 | -1.324 |
| 11 | 0.148 | 0.727 | -0.992 | -0.914 |