TF65_HUMAN.H10DI.A motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

RELA

Model

TF65_HUMAN.H10DI.A

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Origin

ChIP-Seq

Model length

15

Quality

A

Consensus

ndGGGRhWTTCChvn

wAUC

0.8849731554307588

Best AUC

0.9515677511172319

Benchmark datasets

22

Aligned words

505

TF family

NF-kappaB-related factors{6.1.1}

TF subfamily

NF-kappaB p65 subunit-like factors{6.1.1.2}

HGNC

9955

EntrezGene

5970

UniProt ID

TF65_HUMAN

UniProt AC

Q04206

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.3561
0.0005	7.7801
0.0001	12.8481

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	74.888	5.921	26.889	18.653	64.599	7.299	18.32	29.55	57.558	11.113	23.052	29.125	37.658	12.149	50.38	29.91
02	0.0	0.0	234.703	0.0	0.0	0.0	35.556	0.927	0.0	0.952	117.689	0.0	0.0	1.07	105.147	1.022
03	0.0	0.0	0.0	0.0	0.0	0.0	0.952	1.07	0.0	0.967	489.193	2.935	0.0	0.0	1.949	0.0
04	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.967	0.0	0.0	465.911	26.182	1.07	0.0	1.974	0.96
05	1.07	0.0	0.0	0.0	0.0	0.0	0.0	0.0	156.763	0.943	299.464	10.716	5.932	0.0	18.172	4.006
06	66.245	79.15	14.292	4.078	0.0	0.0	0.0	0.943	192.733	55.192	30.626	39.084	5.825	2.049	0.0	6.847
07	114.71	15.018	2.945	132.132	1.925	1.899	0.0	132.567	1.942	0.0	0.0	42.976	0.0	0.0	0.0	50.952
08	18.606	4.82	19.012	76.139	0.0	0.0	0.0	16.917	0.0	0.0	0.0	2.945	0.0	3.048	6.98	348.599
09	2.976	7.831	0.0	7.799	0.0	2.923	0.0	4.944	0.0	8.154	2.978	14.861	0.993	68.978	11.824	362.805
10	0.0	3.969	0.0	0.0	0.0	87.885	0.0	0.0	1.928	12.873	0.0	0.0	3.834	364.397	0.0	22.179
11	0.925	3.859	0.978	0.0	8.011	440.686	0.998	19.43	0.0	0.0	0.0	0.0	0.982	9.819	3.889	7.489
12	2.871	6.131	0.916	0.0	190.199	169.053	41.342	53.77	2.948	1.976	0.941	0.0	2.831	8.966	10.108	5.015
13	43.012	55.098	87.229	13.509	102.622	43.949	24.793	14.76	7.644	17.934	21.799	5.93	3.848	14.526	28.539	11.872
14	40.538	33.552	72.181	10.855	47.938	35.172	10.701	37.697	48.952	42.924	51.772	18.711	6.788	4.904	25.421	8.959

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	0.873	-1.606	-0.143	-0.502	0.726	-1.409	-0.52	-0.049	0.611	-1.006	-0.294	-0.064	0.19	-0.92	0.479	-0.037
02	-4.395	-4.395	2.011	-4.395	-4.395	-4.395	0.133	-3.175	-4.395	-3.156	1.323	-4.395	-4.395	-3.071	1.21	-3.105
03	-4.395	-4.395	-4.395	-4.395	-4.395	-4.395	-3.156	-3.071	-4.395	-3.144	2.745	-2.248	-4.395	-4.395	-2.6	-4.395
04	-4.395	-4.395	-4.395	-4.395	-4.395	-4.395	-4.395	-3.144	-4.395	-4.395	2.696	-0.169	-3.071	-4.395	-2.589	-3.15
05	-3.071	-4.395	-4.395	-4.395	-4.395	-4.395	-4.395	-4.395	1.609	-3.163	2.255	-1.041	-1.605	-4.395	-0.528	-1.968
06	0.751	0.928	-0.762	-1.952	-4.395	-4.395	-4.395	-3.163	1.815	0.569	-0.014	0.227	-1.622	-2.558	-4.395	-1.47
07	1.297	-0.714	-2.245	1.438	-2.61	-2.621	-4.395	1.441	-2.603	-4.395	-4.395	0.321	-4.395	-4.395	-4.395	0.49
08	-0.504	-1.798	-0.483	0.889	-4.395	-4.395	-4.395	-0.598	-4.395	-4.395	-4.395	-2.245	-4.395	-2.214	-1.451	2.406
09	-2.235	-1.342	-4.395	-1.346	-4.395	-2.251	-4.395	-1.775	-4.395	-1.304	-2.235	-0.724	-3.126	0.791	-0.946	2.446
10	-4.395	-1.977	-4.395	-4.395	-4.395	1.032	-4.395	-4.395	-2.609	-0.864	-4.395	-4.395	-2.008	2.451	-4.395	-0.332
11	-3.176	-2.002	-3.137	-4.395	-1.32	2.641	-3.122	-0.462	-4.395	-4.395	-4.395	-4.395	-3.134	-1.125	-1.995	-1.385
12	-2.267	-1.574	-3.183	-4.395	1.802	1.684	0.283	0.543	-2.244	-2.588	-3.164	-4.395	-2.28	-1.213	-1.098	-1.762
13	0.322	0.568	1.024	-0.817	1.186	0.343	-0.222	-0.731	-1.365	-0.54	-0.349	-1.605	-2.005	-0.746	-0.084	-0.942
14	0.263	0.076	0.836	-1.029	0.429	0.123	-1.043	0.191	0.45	0.32	0.506	-0.499	-1.478	-1.782	-0.198	-1.213