Model info
| Transcription factor | TGIF2LX | ||||||||
| Model | TF2LX_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Consensus | GAnAGMTGThAndRY | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 14 | ||||||||
| TF family | TALE-type homeo domain factors{3.1.4} | ||||||||
| TF subfamily | TGIF{3.1.4.6} | ||||||||
| HGNC | 18570 | ||||||||
| EntrezGene | 90316 | ||||||||
| UniProt ID | TF2LX_HUMAN | ||||||||
| UniProt AC | Q8IUE1 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.75 | 0.75 | 10.75 | 1.75 |
| 02 | 11.5 | 1.5 | 0.5 | 0.5 |
| 03 | 1.25 | 10.25 | 1.25 | 1.25 |
| 04 | 12.25 | 1.25 | 0.25 | 0.25 |
| 05 | 2.0 | 0.0 | 12.0 | 0.0 |
| 06 | 3.0 | 8.0 | 2.0 | 1.0 |
| 07 | 0.0 | 0.0 | 0.0 | 14.0 |
| 08 | 2.0 | 0.0 | 12.0 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 14.0 |
| 10 | 2.0 | 10.0 | 0.0 | 2.0 |
| 11 | 11.0 | 0.0 | 1.0 | 2.0 |
| 12 | 2.0 | 2.0 | 3.0 | 7.0 |
| 13 | 7.0 | 1.0 | 2.0 | 4.0 |
| 14 | 5.0 | 0.0 | 8.0 | 1.0 |
| 15 | 1.25 | 4.25 | 0.25 | 8.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.082 | -1.082 | 1.009 | -0.546 |
| 02 | 1.073 | -0.655 | -1.277 | -1.277 |
| 03 | -0.778 | 0.964 | -0.778 | -0.778 |
| 04 | 1.133 | -0.778 | -1.52 | -1.52 |
| 05 | -0.447 | -1.841 | 1.113 | -1.841 |
| 06 | -0.128 | 0.733 | -0.447 | -0.919 |
| 07 | -1.841 | -1.841 | -1.841 | 1.26 |
| 08 | -0.447 | -1.841 | 1.113 | -1.841 |
| 09 | -1.841 | -1.841 | -1.841 | 1.26 |
| 10 | -0.447 | 0.941 | -1.841 | -0.447 |
| 11 | 1.031 | -1.841 | -0.919 | -0.447 |
| 12 | -0.447 | -0.447 | -0.128 | 0.611 |
| 13 | 0.611 | -0.919 | -0.447 | 0.114 |
| 14 | 0.308 | -1.841 | 0.733 | -0.919 |
| 15 | -0.778 | 0.166 | -1.52 | 0.762 |