Model info
| Transcription factor | TBX20 | ||||||||
| Model | TBX20_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | RdGKGKKARvKYRWbRv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 15468 | ||||||||
| TF family | TBX1-related factors{6.5.3} | ||||||||
| TF subfamily | TBX20{6.5.3.0.5} | ||||||||
| HGNC | 11598 | ||||||||
| EntrezGene | 57057 | ||||||||
| UniProt ID | TBX20_HUMAN | ||||||||
| UniProt AC | Q9UMR3 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 9356.012 | 1561.447 | 2530.253 | 2025.087 |
| 02 | 2441.801 | 1852.615 | 9187.294 | 1991.088 |
| 03 | 1023.81 | 941.764 | 12600.988 | 906.236 |
| 04 | 1228.598 | 954.321 | 1568.936 | 11720.943 |
| 05 | 759.084 | 966.097 | 12863.992 | 883.625 |
| 06 | 884.205 | 1226.633 | 1506.211 | 11855.749 |
| 07 | 1313.325 | 1398.504 | 9631.439 | 3129.53 |
| 08 | 13718.533 | 384.98 | 1027.071 | 342.215 |
| 09 | 9472.202 | 977.843 | 3313.614 | 1709.139 |
| 10 | 3294.997 | 2450.498 | 8520.273 | 1207.031 |
| 11 | 1412.071 | 1079.007 | 8939.713 | 4042.007 |
| 12 | 1536.186 | 2485.02 | 2052.46 | 9399.132 |
| 13 | 2460.1 | 888.83 | 11645.465 | 478.404 |
| 14 | 2468.429 | 1620.718 | 1800.254 | 9583.398 |
| 15 | 1652.483 | 2270.306 | 9093.165 | 2456.845 |
| 16 | 10773.981 | 1503.628 | 1667.876 | 1527.313 |
| 17 | 7860.967 | 2602.449 | 2600.864 | 2408.518 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.883 | -0.906 | -0.424 | -0.647 |
| 02 | -0.46 | -0.736 | 0.865 | -0.664 |
| 03 | -1.328 | -1.411 | 1.181 | -1.449 |
| 04 | -1.146 | -1.398 | -0.901 | 1.108 |
| 05 | -1.626 | -1.385 | 1.201 | -1.474 |
| 06 | -1.474 | -1.147 | -0.942 | 1.12 |
| 07 | -1.079 | -1.016 | 0.912 | -0.212 |
| 08 | 1.266 | -2.302 | -1.324 | -2.419 |
| 09 | 0.895 | -1.373 | -0.155 | -0.816 |
| 10 | -0.16 | -0.456 | 0.789 | -1.163 |
| 11 | -1.007 | -1.275 | 0.837 | 0.044 |
| 12 | -0.923 | -0.442 | -0.633 | 0.887 |
| 13 | -0.452 | -1.469 | 1.102 | -2.086 |
| 14 | -0.449 | -0.869 | -0.764 | 0.907 |
| 15 | -0.85 | -0.532 | 0.854 | -0.454 |
| 16 | 1.024 | -0.944 | -0.84 | -0.928 |
| 17 | 0.709 | -0.396 | -0.397 | -0.473 |