Model info
| Transcription factor | TBX19 | ||||||||
| Model | TBX19_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 22 | ||||||||
| Quality | D | ||||||||
| Consensus | dddTMRCAYnTAKGTGTKAhhd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 16587 | ||||||||
| TF family | Brachyury-related factors{6.5.1} | ||||||||
| TF subfamily | TBX19{6.5.1.0.2} | ||||||||
| HGNC | 11596 | ||||||||
| EntrezGene | 9095 | ||||||||
| UniProt ID | TBX19_HUMAN | ||||||||
| UniProt AC | O60806 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6996.5 | 2237.5 | 2447.5 | 4903.5 |
| 02 | 3969.25 | 2408.25 | 3127.25 | 7080.25 |
| 03 | 2642.5 | 1970.5 | 3167.5 | 8804.5 |
| 04 | 457.75 | 695.75 | 415.75 | 15015.75 |
| 05 | 4362.5 | 9330.5 | 2265.5 | 626.5 |
| 06 | 9951.25 | 274.25 | 5451.25 | 908.25 |
| 07 | 177.25 | 16070.25 | 144.25 | 193.25 |
| 08 | 14942.25 | 135.25 | 1369.25 | 138.25 |
| 09 | 1354.75 | 10894.75 | 557.75 | 3777.75 |
| 10 | 5040.5 | 3503.5 | 5569.5 | 2471.5 |
| 11 | 1553.25 | 759.25 | 767.25 | 13505.25 |
| 12 | 14303.75 | 121.75 | 1056.75 | 1102.75 |
| 13 | 1161.25 | 1019.25 | 12513.25 | 1891.25 |
| 14 | 220.75 | 49.75 | 16215.75 | 98.75 |
| 15 | 73.0 | 146.0 | 80.0 | 16286.0 |
| 16 | 86.25 | 78.25 | 16339.25 | 81.25 |
| 17 | 449.0 | 3125.0 | 145.0 | 12866.0 |
| 18 | 306.25 | 1228.25 | 12434.25 | 2616.25 |
| 19 | 15611.5 | 283.5 | 401.5 | 288.5 |
| 20 | 9894.25 | 2606.25 | 1538.25 | 2546.25 |
| 21 | 7514.75 | 2440.75 | 2257.75 | 4371.75 |
| 22 | 4922.5 | 1983.5 | 2125.5 | 7553.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.523 | -0.616 | -0.527 | 0.168 |
| 02 | -0.044 | -0.543 | -0.282 | 0.535 |
| 03 | -0.45 | -0.743 | -0.269 | 0.753 |
| 04 | -2.199 | -1.782 | -2.295 | 1.286 |
| 05 | 0.051 | 0.811 | -0.604 | -1.887 |
| 06 | 0.875 | -2.708 | 0.274 | -1.516 |
| 07 | -3.139 | 1.354 | -3.342 | -3.054 |
| 08 | 1.282 | -3.406 | -1.107 | -3.384 |
| 09 | -1.117 | 0.966 | -2.002 | -0.093 |
| 10 | 0.195 | -0.168 | 0.295 | -0.517 |
| 11 | -0.981 | -1.695 | -1.685 | 1.18 |
| 12 | 1.238 | -3.509 | -1.365 | -1.323 |
| 13 | -1.271 | -1.401 | 1.104 | -0.784 |
| 14 | -2.923 | -4.376 | 1.363 | -3.714 |
| 15 | -4.007 | -3.33 | -3.919 | 1.368 |
| 16 | -3.846 | -3.94 | 1.371 | -3.904 |
| 17 | -2.218 | -0.283 | -3.337 | 1.132 |
| 18 | -2.598 | -1.215 | 1.098 | -0.46 |
| 19 | 1.325 | -2.675 | -2.329 | -2.657 |
| 20 | 0.869 | -0.464 | -0.991 | -0.487 |
| 21 | 0.594 | -0.529 | -0.607 | 0.053 |
| 22 | 0.172 | -0.737 | -0.668 | 0.6 |