Model info
| Transcription factor | RBPJ | ||||||||
| Model | SUH_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Consensus | SbSTGRGAAhn | ||||||||
| wAUC | 0.847846682398414 | ||||||||
| Best AUC | 0.847846682398414 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | CSL-related factors{6.1.4} | ||||||||
| TF subfamily | M{6.1.4.1} | ||||||||
| HGNC | 5724 | ||||||||
| EntrezGene | 3516 | ||||||||
| UniProt ID | SUH_HUMAN | ||||||||
| UniProt AC | Q06330 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 12.047 | 236.086 | 185.544 | 65.48 |
| 02 | 33.714 | 212.807 | 41.51 | 211.127 |
| 03 | 71.684 | 124.244 | 283.59 | 19.64 |
| 04 | 0.812 | 0.0 | 2.921 | 495.425 |
| 05 | 1.807 | 2.694 | 493.653 | 1.005 |
| 06 | 202.466 | 0.849 | 250.804 | 45.039 |
| 07 | 0.0 | 0.0 | 498.162 | 0.996 |
| 08 | 485.558 | 0.864 | 8.554 | 4.182 |
| 09 | 417.072 | 17.442 | 62.891 | 1.752 |
| 10 | 189.053 | 155.853 | 73.92 | 80.331 |
| 11 | 147.327 | 122.809 | 119.988 | 109.033 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.229 | 0.632 | 0.393 | -0.634 |
| 02 | -1.276 | 0.529 | -1.076 | 0.521 |
| 03 | -0.545 | -0.004 | 0.814 | -1.785 |
| 04 | -3.978 | -4.399 | -3.341 | 1.37 |
| 05 | -3.627 | -3.393 | 1.366 | -3.9 |
| 06 | 0.479 | -3.963 | 0.692 | -0.998 |
| 07 | -4.399 | -4.399 | 1.375 | -3.903 |
| 08 | 1.349 | -3.956 | -2.526 | -3.092 |
| 09 | 1.198 | -1.895 | -0.673 | -3.643 |
| 10 | 0.411 | 0.22 | -0.515 | -0.434 |
| 11 | 0.164 | -0.016 | -0.039 | -0.133 |