Model info
| Transcription factor | Srf | ||||||||
| Model | SRF_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Consensus | hWKbCCWWATAWGGh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 2187 | ||||||||
| TF family | Responders to external signals (SRF/RLM1){5.1.2} | ||||||||
| TF subfamily | SRF{5.1.2.0.1} | ||||||||
| MGI | 106658 | ||||||||
| EntrezGene | 20807 | ||||||||
| UniProt ID | SRF_MOUSE | ||||||||
| UniProt AC | Q9JM73 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1138.844 | 450.274 | 266.95 | 319.932 |
| 02 | 301.274 | 266.561 | 63.961 | 1544.204 |
| 03 | 145.698 | 176.303 | 1236.683 | 617.316 |
| 04 | 324.363 | 1077.181 | 390.233 | 384.223 |
| 05 | 35.715 | 2073.527 | 9.826 | 56.931 |
| 06 | 14.04 | 2040.62 | 4.9 | 116.441 |
| 07 | 1272.886 | 128.185 | 56.743 | 718.187 |
| 08 | 547.496 | 58.107 | 76.647 | 1493.75 |
| 09 | 1834.354 | 55.316 | 62.205 | 224.125 |
| 10 | 323.459 | 122.119 | 20.31 | 1710.111 |
| 11 | 1726.449 | 64.512 | 25.071 | 359.968 |
| 12 | 948.737 | 16.056 | 59.831 | 1151.375 |
| 13 | 67.957 | 4.668 | 2082.143 | 21.232 |
| 14 | 42.859 | 72.515 | 2039.28 | 21.345 |
| 15 | 795.02 | 623.787 | 188.141 | 569.052 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.737 | -0.188 | -0.708 | -0.528 |
| 02 | -0.588 | -0.71 | -2.115 | 1.041 |
| 03 | -1.308 | -1.119 | 0.819 | 0.126 |
| 04 | -0.515 | 0.681 | -0.331 | -0.346 |
| 05 | -2.674 | 1.335 | -3.839 | -2.227 |
| 06 | -3.532 | 1.319 | -4.382 | -1.529 |
| 07 | 0.848 | -1.434 | -2.231 | 0.277 |
| 08 | 0.006 | -2.208 | -1.939 | 1.008 |
| 09 | 1.213 | -2.255 | -2.142 | -0.882 |
| 10 | -0.517 | -1.482 | -3.201 | 1.143 |
| 11 | 1.152 | -2.106 | -3.007 | -0.411 |
| 12 | 0.555 | -3.413 | -2.179 | 0.748 |
| 13 | -2.056 | -4.417 | 1.34 | -3.16 |
| 14 | -2.501 | -1.993 | 1.319 | -3.155 |
| 15 | 0.378 | 0.136 | -1.055 | 0.045 |