Model info
Transcription factorSrf
ModelSRF_MOUSE.H10MO.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length15
Quality
A
ConsensushWKbCCWWATAWGGh
wAUC
Best AUC
Benchmark datasets
Aligned words2187
TF familyResponders to external signals (SRF/RLM1){5.1.2}
TF subfamilySRF{5.1.2.0.1}
MGI106658
EntrezGene20807
UniProt IDSRF_MOUSE
UniProt ACQ9JM73
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.4671
0.0005 4.5631
0.0001 6.8241
PCM
ACGT
011138.844450.274266.95319.932
02301.274266.56163.9611544.204
03145.698176.3031236.683617.316
04324.3631077.181390.233384.223
0535.7152073.5279.82656.931
0614.042040.624.9116.441
071272.886128.18556.743718.187
08547.49658.10776.6471493.75
091834.35455.31662.205224.125
10323.459122.11920.311710.111
111726.44964.51225.071359.968
12948.73716.05659.8311151.375
1367.9574.6682082.14321.232
1442.85972.5152039.2821.345
15795.02623.787188.141569.052
PWM
ACGT
010.737-0.188-0.708-0.528
02-0.588-0.71-2.1151.041
03-1.308-1.1190.8190.126
04-0.5150.681-0.331-0.346
05-2.6741.335-3.839-2.227
06-3.5321.319-4.382-1.529
070.848-1.434-2.2310.277
080.006-2.208-1.9391.008
091.213-2.255-2.142-0.882
10-0.517-1.482-3.2011.143
111.152-2.106-3.007-0.411
120.555-3.413-2.1790.748
13-2.056-4.4171.34-3.16
14-2.501-1.9931.319-3.155
150.3780.136-1.0550.045