Model info
| Transcription factor | SRF | ||||||||
| Model | SRF_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 18 | ||||||||
| Quality | A | ||||||||
| Consensus | hhYbbCCWKhYWYRGbYh | ||||||||
| wAUC | 0.7865671692266527 | ||||||||
| Best AUC | 0.8595180669938943 | ||||||||
| Benchmark datasets | 10 | ||||||||
| Aligned words | 485 | ||||||||
| TF family | Responders to external signals (SRF/RLM1){5.1.2} | ||||||||
| TF subfamily | SRF{5.1.2.0.1} | ||||||||
| HGNC | 11291 | ||||||||
| EntrezGene | 6722 | ||||||||
| UniProt ID | SRF_HUMAN | ||||||||
| UniProt AC | P11831 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 199.103 | 101.381 | 87.503 | 94.446 |
| 02 | 88.981 | 96.856 | 86.495 | 210.101 |
| 03 | 56.976 | 80.673 | 10.661 | 334.122 |
| 04 | 20.19 | 133.068 | 129.229 | 199.946 |
| 05 | 65.284 | 87.33 | 134.137 | 195.681 |
| 06 | 5.82 | 444.189 | 4.064 | 28.36 |
| 07 | 0.865 | 435.261 | 4.793 | 41.512 |
| 08 | 88.819 | 45.935 | 4.691 | 342.987 |
| 09 | 40.644 | 13.242 | 101.127 | 327.419 |
| 10 | 232.316 | 127.347 | 21.522 | 101.247 |
| 11 | 9.558 | 127.466 | 3.705 | 341.703 |
| 12 | 183.526 | 24.085 | 15.278 | 259.544 |
| 13 | 36.362 | 101.289 | 23.009 | 321.772 |
| 14 | 102.733 | 0.968 | 350.582 | 28.149 |
| 15 | 13.777 | 9.967 | 439.783 | 18.905 |
| 16 | 66.084 | 218.575 | 106.819 | 90.954 |
| 17 | 54.93 | 301.488 | 51.619 | 74.396 |
| 18 | 174.049 | 61.238 | 41.763 | 205.383 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.496 | -0.171 | -0.316 | -0.241 |
| 02 | -0.3 | -0.216 | -0.327 | 0.55 |
| 03 | -0.736 | -0.396 | -2.303 | 1.011 |
| 04 | -1.726 | 0.097 | 0.068 | 0.5 |
| 05 | -0.603 | -0.318 | 0.105 | 0.479 |
| 06 | -2.809 | 1.294 | -3.081 | -1.407 |
| 07 | -3.926 | 1.274 | -2.959 | -1.043 |
| 08 | -0.301 | -0.945 | -2.975 | 1.037 |
| 09 | -1.063 | -2.112 | -0.174 | 0.991 |
| 10 | 0.649 | 0.054 | -1.667 | -0.173 |
| 11 | -2.398 | 0.055 | -3.147 | 1.033 |
| 12 | 0.415 | -1.562 | -1.983 | 0.76 |
| 13 | -1.17 | -0.172 | -1.604 | 0.973 |
| 14 | -0.158 | -3.884 | 1.059 | -1.414 |
| 15 | -2.076 | -2.362 | 1.285 | -1.787 |
| 16 | -0.591 | 0.589 | -0.12 | -0.278 |
| 17 | -0.771 | 0.909 | -0.832 | -0.475 |
| 18 | 0.363 | -0.666 | -1.037 | 0.527 |