Model info
Transcription factorSRF
ModelSRF_HUMAN.H10DI.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
OriginChIP-Seq
Model length23
Quality
A
ConsensusnbbbbCCWYWYhYRGbvnbnnbn
wAUC
0.8017815764530157
Best AUC
0.8864223864831938
Benchmark datasets10
Aligned words507
TF familyResponders to external signals (SRF/RLM1){5.1.2}
TF subfamilySRF{5.1.2.0.1}
HGNC11291
EntrezGene6722
UniProt IDSRF_HUMAN
UniProt ACP11831
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.3741
0.0005 10.1191
0.0001 13.7051
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0116.4229.32318.45936.5829.248102.98419.81830.57710.21157.33321.15626.63915.19136.31813.18636.556
0215.59912.42619.00924.03520.46370.56230.484104.455.59727.2336.64633.1444.64931.58911.22582.888
031.7717.79819.35917.3811.99630.20120.60279.0125.67537.324.52119.8477.87847.68259.758129.197
044.4216.40310.0146.4838.13929.13542.47243.25515.21536.92341.10610.99719.02964.64665.68996.072
050.044.0652.7390.00.0134.3961.0661.6442.001150.1055.3331.8421.644146.7196.4022.042
060.03.6450.00.03.643442.6980.028.9450.08.9672.2314.3430.03.6670.7941.066
070.00.02.6670.975106.17117.63137.666297.5090.00.01.7871.2387.5310.02.77624.048
0821.11220.433.0269.141.9275.4552.2667.9832.31729.1195.0048.4579.0777.65518.633218.412
0928.8120.00.9194.69516.92724.0160.95890.7594.23515.4232.5836.682124.74618.0988.746152.401
102.54716.2936.639149.2411.12717.132.8436.4410.05.2920.8747.0384.2330.86222.194197.251
114.950.852.1050.010.74731.975.28821.5730.8525.3215.4570.919159.614117.7768.407104.174
1239.91410.6327.67117.9466.16897.1444.25668.3492.2677.4652.578.95517.79416.7526.01786.102
131.9910.064.1510.030.16513.78779.6848.3570.851.64417.2560.76329.8074.528233.94613.071
141.8366.48653.5940.8970.855.2087.8736.0287.62634.58338.92113.9090.05.62114.6061.964
150.04.4271.9033.9824.57835.5596.6215.13866.77159.76100.17688.2880.016.6072.5813.61
1616.8830.66621.0652.73743.079102.45835.03135.78518.69268.74914.1919.64927.44540.91320.83811.822
1731.6813.82630.40230.18998.30353.63935.34755.49724.05831.87415.49619.6987.91213.85411.14627.081
1828.48142.14534.22957.09814.1242.69515.11641.2629.00946.68627.0759.6216.92736.83932.29356.405
1915.5613.25131.9457.77946.10449.86241.87330.52626.60722.34243.04516.71914.77545.65162.43141.53
2017.1517.58651.10827.20221.77739.33125.95834.03922.35257.64361.02638.2731.80339.62129.87825.252
2110.58916.19831.614.6867.71663.75323.87248.83921.23971.02546.85928.8467.75338.44837.99640.569
2216.7668.31818.4453.76830.37379.87924.93554.23833.1248.71737.64920.85213.59340.45247.54921.347
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.633-0.063-0.5180.156-0.0651.184-0.448-0.022-1.0940.601-0.384-0.158-0.7080.149-0.8460.155
02-0.683-0.904-0.489-0.259-0.4170.808-0.0251.198-1.665-0.136-1.5040.058-1.8370.011-1.0020.968
03-2.684-1.352-0.471-0.577-0.938-0.034-0.410.92-1.6520.176-1.863-0.447-1.3420.4180.6421.41
04-1.884-1.539-1.112-1.527-1.311-0.0690.3040.322-0.7070.1650.271-1.022-0.4880.7210.7361.115
05-4.40.34-2.314-4.4-4.41.449-3.08-2.745-2.5831.56-1.71-2.652-2.7451.537-1.539-2.566
06-4.4-2.06-4.4-4.4-2.062.639-4.4-0.076-4.4-1.218-2.492-1.9-4.4-2.054-3.286-3.08
07-4.4-4.4-2.337-3.1441.214-0.5630.1852.242-4.4-4.4-2.677-2.968-1.385-4.4-2.302-0.258
08-0.386-0.419-2.2280.787-2.615-1.689-2.478-1.33-2.459-0.07-1.769-1.275-1.2070.903-0.5091.934
09-0.08-4.4-3.187-1.828-0.603-0.26-3.1571.058-1.923-0.694-2.365-1.4981.375-0.537-1.2421.575
10-2.377-0.64-1.5051.554-3.039-0.591-2.2830.152-4.4-1.717-3.221-1.449-1.924-0.012-0.3371.832
11-1.779-3.241-2.541-4.4-1.0440.023-1.718-0.365-3.241-0.208-1.689-3.1871.6211.318-1.281.195
120.242-1.055-1.3681.319-1.5741.126-1.9190.776-2.478-1.393-2.37-1.22-0.554-0.613-1.5971.006
13-2.587-4.40.713-4.4-0.035-0.8030.929-1.286-3.241-2.745-0.584-3.314-0.047-1.8622.002-0.855
14-2.655-1.5270.534-3.203-3.241-1.732-1.343-1.596-1.3730.12.373-0.794-4.4-1.661-0.747-2.599
15-4.4-1.882-2.625-1.98-1.8520.128-1.507-1.7450.7531.6221.1561.031-4.4-0.621-2.366-2.068
16-0.606-0.019-0.388-2.3150.3181.1790.1130.134-0.5060.782-0.775-1.148-0.1280.267-0.399-0.952
170.013-0.8-0.027-0.0341.1380.5350.1220.569-0.2580.02-0.689-0.454-1.338-0.798-1.009-0.141
18-0.0920.2960.090.597-0.780.309-0.7130.275-1.2140.397-0.142-1.151-1.4640.1630.0320.585
19-0.685-2.1630.022-1.3540.3850.4630.29-0.023-0.159-0.3310.317-0.615-0.7360.3750.6860.281
20-0.59-1.3780.487-0.137-0.3560.227-0.1830.084-0.330.6070.6630.2-2.670.235-0.044-0.21
21-1.059-0.6460.011-1.83-1.3620.707-0.2660.442-0.380.8140.401-0.079-1.3570.2050.1930.258
22-0.612-1.29-0.519-2.03-0.0280.931-0.2230.5460.0570.440.184-0.398-0.8170.2550.416-0.375