Model info
| Transcription factor | Spz1 | ||||||||
| Model | SPZ1_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Consensus | nSRSKKTTMCMbhbGn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 11 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| MGI | 1930801 | ||||||||
| EntrezGene | 79401 | ||||||||
| UniProt ID | SPZ1_MOUSE | ||||||||
| UniProt AC | Q99MY0 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.5 | 5.5 | 1.5 | 1.5 |
| 02 | 0.0 | 2.0 | 8.0 | 1.0 |
| 03 | 2.0 | 1.0 | 8.0 | 0.0 |
| 04 | 0.0 | 7.0 | 3.0 | 1.0 |
| 05 | 2.0 | 0.0 | 3.0 | 6.0 |
| 06 | 1.0 | 0.0 | 8.0 | 2.0 |
| 07 | 4.0 | 0.0 | 0.0 | 7.0 |
| 08 | 5.0 | 0.0 | 0.0 | 6.0 |
| 09 | 7.0 | 3.0 | 1.0 | 0.0 |
| 10 | 1.0 | 9.0 | 1.0 | 0.0 |
| 11 | 3.0 | 6.0 | 2.0 | 0.0 |
| 12 | 0.0 | 5.0 | 3.0 | 3.0 |
| 13 | 2.0 | 3.0 | 1.0 | 5.0 |
| 14 | 0.0 | 2.0 | 7.0 | 2.0 |
| 15 | 0.0 | 1.0 | 10.0 | 0.0 |
| 16 | 1.75 | 1.75 | 5.75 | 1.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.078 | 0.599 | -0.467 | -0.467 |
| 02 | -1.721 | -0.253 | 0.943 | -0.739 |
| 03 | -0.253 | -0.739 | 0.943 | -1.721 |
| 04 | -1.721 | 0.819 | 0.072 | -0.739 |
| 05 | -0.253 | -1.721 | 0.072 | 0.678 |
| 06 | -0.739 | -1.721 | 0.943 | -0.253 |
| 07 | 0.317 | -1.721 | -1.721 | 0.819 |
| 08 | 0.514 | -1.721 | -1.721 | 0.678 |
| 09 | 0.819 | 0.072 | -0.739 | -1.721 |
| 10 | -0.739 | 1.053 | -0.739 | -1.721 |
| 11 | 0.072 | 0.678 | -0.253 | -1.721 |
| 12 | -1.721 | 0.514 | 0.072 | 0.072 |
| 13 | -0.253 | 0.072 | -0.739 | 0.514 |
| 14 | -1.721 | -0.253 | 0.819 | -0.253 |
| 15 | -1.721 | -0.739 | 1.152 | -1.721 |
| 16 | -0.355 | -0.355 | 0.64 | -0.355 |