Model info
| Transcription factor | SP1 | ||||||||
| Model | SP1_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 19 | ||||||||
| Quality | C | ||||||||
| Consensus | vvvvvvKGGGMGGRRvbnv | ||||||||
| wAUC | 0.7403190197502194 | ||||||||
| Best AUC | 0.7802564830286888 | ||||||||
| Benchmark datasets | 6 | ||||||||
| Aligned words | 3064 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors{2.3.1} | ||||||||
| TF subfamily | Sp1-like factors{2.3.1.1} | ||||||||
| HGNC | 11205 | ||||||||
| EntrezGene | 6667 | ||||||||
| UniProt ID | SP1_HUMAN | ||||||||
| UniProt AC | P08047 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 532.298 | 554.472 | 1558.689 | 287.763 |
| 02 | 645.025 | 510.577 | 1380.483 | 397.137 |
| 03 | 481.911 | 412.026 | 1741.913 | 297.372 |
| 04 | 762.118 | 586.503 | 1304.265 | 280.336 |
| 05 | 1050.591 | 521.54 | 935.369 | 425.723 |
| 06 | 625.561 | 369.752 | 1709.8 | 228.109 |
| 07 | 316.287 | 63.938 | 2140.552 | 412.445 |
| 08 | 475.553 | 14.0 | 2425.303 | 18.366 |
| 09 | 8.887 | 13.525 | 2899.433 | 11.378 |
| 10 | 19.214 | 33.88 | 2877.316 | 2.812 |
| 11 | 536.292 | 1899.503 | 62.239 | 435.188 |
| 12 | 50.984 | 28.366 | 2757.04 | 96.832 |
| 13 | 43.809 | 43.511 | 2725.198 | 120.705 |
| 14 | 482.124 | 146.93 | 2184.576 | 119.591 |
| 15 | 248.635 | 206.766 | 2341.613 | 136.209 |
| 16 | 432.065 | 1610.179 | 561.294 | 329.685 |
| 17 | 279.199 | 1269.121 | 767.906 | 616.996 |
| 18 | 790.055 | 460.422 | 1089.248 | 593.497 |
| 19 | 607.025 | 660.041 | 1391.796 | 274.36 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.319 | -0.279 | 0.753 | -0.931 |
| 02 | -0.128 | -0.361 | 0.631 | -0.611 |
| 03 | -0.418 | -0.574 | 0.864 | -0.899 |
| 04 | 0.038 | -0.223 | 0.575 | -0.957 |
| 05 | 0.359 | -0.34 | 0.243 | -0.542 |
| 06 | -0.158 | -0.682 | 0.845 | -1.162 |
| 07 | -0.837 | -2.412 | 1.069 | -0.573 |
| 08 | -0.432 | -3.828 | 1.194 | -3.587 |
| 09 | -4.213 | -3.858 | 1.373 | -4.007 |
| 10 | -3.546 | -3.02 | 1.365 | -5.03 |
| 11 | -0.312 | 0.95 | -2.438 | -0.52 |
| 12 | -2.63 | -3.187 | 1.322 | -2.007 |
| 13 | -2.776 | -2.782 | 1.311 | -1.791 |
| 14 | -0.418 | -1.597 | 1.09 | -1.8 |
| 15 | -1.076 | -1.259 | 1.159 | -1.672 |
| 16 | -0.527 | 0.785 | -0.266 | -0.796 |
| 17 | -0.961 | 0.547 | 0.046 | -0.172 |
| 18 | 0.074 | -0.464 | 0.395 | -0.211 |
| 19 | -0.188 | -0.105 | 0.64 | -0.979 |