Model info
| Transcription factor | Sox9 | ||||||||
| Model | SOX9_MOUSE.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Consensus | bYYATTGTTYh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 158 | ||||||||
| TF family | SOX-related factors{4.1.1} | ||||||||
| TF subfamily | Group E{4.1.1.5} | ||||||||
| MGI | 98371 | ||||||||
| EntrezGene | 20682 | ||||||||
| UniProt ID | SOX9_MOUSE | ||||||||
| UniProt AC | Q04887 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 20.307 | 60.418 | 24.42 | 54.861 |
| 02 | 3.729 | 115.709 | 16.801 | 23.767 |
| 03 | 6.253 | 101.904 | 2.084 | 49.765 |
| 04 | 144.083 | 0.0 | 0.0 | 15.922 |
| 05 | 2.084 | 0.823 | 2.176 | 154.923 |
| 06 | 1.262 | 3.346 | 0.0 | 155.398 |
| 07 | 1.262 | 0.0 | 158.744 | 0.0 |
| 08 | 4.552 | 0.823 | 0.0 | 154.631 |
| 09 | 11.244 | 5.43 | 8.812 | 134.52 |
| 10 | 15.412 | 88.248 | 6.727 | 49.618 |
| 11 | 26.911 | 19.105 | 19.013 | 94.977 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.649 | 0.402 | -0.474 | 0.308 |
| 02 | -2.111 | 1.042 | -0.826 | -0.5 |
| 03 | -1.702 | 0.916 | -2.51 | 0.212 |
| 04 | 1.259 | -3.482 | -3.482 | -0.876 |
| 05 | -2.51 | -2.982 | -2.483 | 1.331 |
| 06 | -2.792 | -2.191 | -3.482 | 1.334 |
| 07 | -2.792 | -3.482 | 1.355 | -3.482 |
| 08 | -1.959 | -2.982 | -3.482 | 1.329 |
| 09 | -1.193 | -1.818 | -1.41 | 1.191 |
| 10 | -0.906 | 0.774 | -1.641 | 0.209 |
| 11 | -0.382 | -0.706 | -0.71 | 0.847 |