Model info
Transcription factorSOX9
ModelSOX9_HUMAN.H10MO.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length11
Quality
B
ConsensusbYYATTGTTYh
wAUC
Best AUC
Benchmark datasets
Aligned words158
TF familySOX-related factors{4.1.1}
TF subfamilyGroup E{4.1.1.5}
HGNC11204
EntrezGene6662
UniProt IDSOX9_HUMAN
UniProt ACP48436
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.2421
0.0005 5.2311
0.0001 7.2331
PCM
ACGT
0120.30760.41824.4254.861
023.729115.70916.80123.767
036.253101.9042.08449.765
04144.0830.00.015.922
052.0840.8232.176154.923
061.2623.3460.0155.398
071.2620.0158.7440.0
084.5520.8230.0154.631
0911.2445.438.812134.52
1015.41288.2486.72749.618
1126.91119.10519.01394.977
PWM
ACGT
01-0.6490.402-0.4740.308
02-2.1111.042-0.826-0.5
03-1.7020.916-2.510.212
041.259-3.482-3.482-0.876
05-2.51-2.982-2.4831.331
06-2.792-2.191-3.4821.334
07-2.792-3.4821.355-3.482
08-1.959-2.982-3.4821.329
09-1.193-1.818-1.411.191
10-0.9060.774-1.6410.209
11-0.382-0.706-0.710.847