Model info
Transcription factorSox5
ModelSOX5_MOUSE.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length8
Quality
C
ConsensusbATTGTTh
wAUC
Best AUC
Benchmark datasets
Aligned words69
TF familySOX-related factors{4.1.1}
TF subfamilyGroup D{4.1.1.4}
MGI98367
EntrezGene20678
UniProt IDSOX5_MOUSE
UniProt ACP35710
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.9453
0.0005 5.5689
0.0001 7.3835
PCM
ACGT
019.1121.66411.11627.539
0260.7060.04.0134.711
030.02.3564.52862.546
040.7850.7850.067.859
053.0452.35662.4591.57
060.7853.6560.064.989
073.832.9581.48361.158
0826.22910.8379.08423.28
PWM
ACGT
01-0.5940.21-0.4140.44
021.21-2.855-1.289-1.16
03-2.855-1.685-1.1931.239
04-2.301-2.301-2.8551.32
05-1.501-1.6851.238-1.946
06-2.301-1.362-2.8551.277
07-1.326-1.522-1.981.217
080.393-0.437-0.5960.279