Transcription factor | Sox5 | ||||||||
Model | SOX5_MOUSE.H10MO.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 8 | ||||||||
Quality | C | ||||||||
Consensus | bATTGTTh | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 69 | ||||||||
TF family | SOX-related factors{4.1.1} | ||||||||
TF subfamily | Group D{4.1.1.4} | ||||||||
MGI | 98367 | ||||||||
EntrezGene | 20678 | ||||||||
UniProt ID | SOX5_MOUSE | ||||||||
UniProt AC | P35710 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 9.11 | 21.664 | 11.116 | 27.539 |
02 | 60.706 | 0.0 | 4.013 | 4.711 |
03 | 0.0 | 2.356 | 4.528 | 62.546 |
04 | 0.785 | 0.785 | 0.0 | 67.859 |
05 | 3.045 | 2.356 | 62.459 | 1.57 |
06 | 0.785 | 3.656 | 0.0 | 64.989 |
07 | 3.83 | 2.958 | 1.483 | 61.158 |
08 | 26.229 | 10.837 | 9.084 | 23.28 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.594 | 0.21 | -0.414 | 0.44 |
02 | 1.21 | -2.855 | -1.289 | -1.16 |
03 | -2.855 | -1.685 | -1.193 | 1.239 |
04 | -2.301 | -2.301 | -2.855 | 1.32 |
05 | -1.501 | -1.685 | 1.238 | -1.946 |
06 | -2.301 | -1.362 | -2.855 | 1.277 |
07 | -1.326 | -1.522 | -1.98 | 1.217 |
08 | 0.393 | -0.437 | -0.596 | 0.279 |