Model info
| Transcription factor | Sox4 | ||||||||
| Model | SOX4_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Consensus | CSCTTTGTTYTn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 8 | ||||||||
| TF family | SOX-related factors{4.1.1} | ||||||||
| TF subfamily | Group C{4.1.1.3} | ||||||||
| MGI | 98366 | ||||||||
| EntrezGene | 20677 | ||||||||
| UniProt ID | SOX4_MOUSE | ||||||||
| UniProt AC | Q06831 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.233 | 6.274 | 0.247 | 0.247 |
| 02 | 0.0 | 2.959 | 4.055 | 0.986 |
| 03 | 0.0 | 7.014 | 0.0 | 0.986 |
| 04 | 0.986 | 0.986 | 0.0 | 6.027 |
| 05 | 0.0 | 0.986 | 0.0 | 7.014 |
| 06 | 0.0 | 0.986 | 0.0 | 7.014 |
| 07 | 0.0 | 0.0 | 8.0 | 0.0 |
| 08 | 0.0 | 0.986 | 0.0 | 7.014 |
| 09 | 0.0 | 0.986 | 0.0 | 7.014 |
| 10 | 0.986 | 5.041 | 0.0 | 1.973 |
| 11 | 0.0 | 0.0 | 1.973 | 6.027 |
| 12 | 1.233 | 4.301 | 1.233 | 1.233 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.363 | 0.992 | -1.19 | -1.19 |
| 02 | -1.578 | 0.322 | 0.596 | -0.515 |
| 03 | -1.578 | 1.095 | -1.578 | -0.515 |
| 04 | -0.515 | -0.515 | -1.578 | 0.955 |
| 05 | -1.578 | -0.515 | -1.578 | 1.095 |
| 06 | -1.578 | -0.515 | -1.578 | 1.095 |
| 07 | -1.578 | -1.578 | 1.218 | -1.578 |
| 08 | -1.578 | -0.515 | -1.578 | 1.095 |
| 09 | -1.578 | -0.515 | -1.578 | 1.095 |
| 10 | -0.515 | 0.792 | -1.578 | -0.011 |
| 11 | -1.578 | -1.578 | -0.011 | 0.955 |
| 12 | -0.363 | 0.649 | -0.363 | -0.363 |