Model info
Transcription factorSOX4
ModelSOX4_HUMAN.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length12
Quality
C
ConsensusCSCTTTGTTYTn
wAUC
Best AUC
Benchmark datasets
Aligned words8
TF familySOX-related factors{4.1.1}
TF subfamilyGroup C{4.1.1.3}
HGNC11200
EntrezGene6659
UniProt IDSOX4_HUMAN
UniProt ACQ06945
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.8748
0.0005 5.5413
0.0001 6.9893
PCM
ACGT
011.2336.2740.2470.247
020.02.9594.0550.986
030.07.0140.00.986
040.9860.9860.06.027
050.00.9860.07.014
060.00.9860.07.014
070.00.08.00.0
080.00.9860.07.014
090.00.9860.07.014
100.9865.0410.01.973
110.00.01.9736.027
121.2334.3011.2331.233
PWM
ACGT
01-0.3630.992-1.19-1.19
02-1.5780.3220.596-0.515
03-1.5781.095-1.578-0.515
04-0.515-0.515-1.5780.955
05-1.578-0.515-1.5781.095
06-1.578-0.515-1.5781.095
07-1.578-1.5781.218-1.578
08-1.578-0.515-1.5781.095
09-1.578-0.515-1.5781.095
10-0.5150.792-1.578-0.011
11-1.578-1.578-0.0110.955
12-0.3630.649-0.363-0.363