Transcription factor | SOX4 | ||||||||
Model | SOX4_HUMAN.H10MO.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 12 | ||||||||
Quality | C | ||||||||
Consensus | CSCTTTGTTYTn | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 8 | ||||||||
TF family | SOX-related factors{4.1.1} | ||||||||
TF subfamily | Group C{4.1.1.3} | ||||||||
HGNC | 11200 | ||||||||
EntrezGene | 6659 | ||||||||
UniProt ID | SOX4_HUMAN | ||||||||
UniProt AC | Q06945 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 1.233 | 6.274 | 0.247 | 0.247 |
02 | 0.0 | 2.959 | 4.055 | 0.986 |
03 | 0.0 | 7.014 | 0.0 | 0.986 |
04 | 0.986 | 0.986 | 0.0 | 6.027 |
05 | 0.0 | 0.986 | 0.0 | 7.014 |
06 | 0.0 | 0.986 | 0.0 | 7.014 |
07 | 0.0 | 0.0 | 8.0 | 0.0 |
08 | 0.0 | 0.986 | 0.0 | 7.014 |
09 | 0.0 | 0.986 | 0.0 | 7.014 |
10 | 0.986 | 5.041 | 0.0 | 1.973 |
11 | 0.0 | 0.0 | 1.973 | 6.027 |
12 | 1.233 | 4.301 | 1.233 | 1.233 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.363 | 0.992 | -1.19 | -1.19 |
02 | -1.578 | 0.322 | 0.596 | -0.515 |
03 | -1.578 | 1.095 | -1.578 | -0.515 |
04 | -0.515 | -0.515 | -1.578 | 0.955 |
05 | -1.578 | -0.515 | -1.578 | 1.095 |
06 | -1.578 | -0.515 | -1.578 | 1.095 |
07 | -1.578 | -1.578 | 1.218 | -1.578 |
08 | -1.578 | -0.515 | -1.578 | 1.095 |
09 | -1.578 | -0.515 | -1.578 | 1.095 |
10 | -0.515 | 0.792 | -1.578 | -0.011 |
11 | -1.578 | -1.578 | -0.011 | 0.955 |
12 | -0.363 | 0.649 | -0.363 | -0.363 |