Model info
| Transcription factor | SOX3 | ||||||||
| Model | SOX3_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Consensus | WvAATGnWATTbW | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 2748 | ||||||||
| TF family | SOX-related factors{4.1.1} | ||||||||
| TF subfamily | Group B{4.1.1.2} | ||||||||
| HGNC | 11199 | ||||||||
| EntrezGene | 6658 | ||||||||
| UniProt ID | SOX3_HUMAN | ||||||||
| UniProt AC | P41225 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 968.0 | 187.0 | 187.0 | 1406.0 |
| 02 | 282.0 | 1293.0 | 1013.0 | 160.0 |
| 03 | 2645.25 | 14.25 | 66.25 | 22.25 |
| 04 | 2514.0 | 151.0 | 49.0 | 34.0 |
| 05 | 3.75 | 0.75 | 26.75 | 2716.75 |
| 06 | 22.0 | 0.0 | 2724.0 | 2.0 |
| 07 | 475.0 | 538.0 | 722.0 | 1013.0 |
| 08 | 926.0 | 378.0 | 65.0 | 1379.0 |
| 09 | 2718.25 | 6.25 | 17.25 | 6.25 |
| 10 | 42.5 | 14.5 | 245.5 | 2445.5 |
| 11 | 25.75 | 11.75 | 78.75 | 2631.75 |
| 12 | 169.5 | 907.5 | 1388.5 | 282.5 |
| 13 | 1402.25 | 161.25 | 213.25 | 971.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.342 | -1.294 | -1.294 | 0.715 |
| 02 | -0.886 | 0.631 | 0.387 | -1.448 |
| 03 | 1.346 | -3.748 | -2.312 | -3.348 |
| 04 | 1.295 | -1.505 | -2.604 | -2.952 |
| 05 | -4.79 | -5.531 | -3.177 | 1.373 |
| 06 | -3.358 | -5.852 | 1.375 | -5.154 |
| 07 | -0.368 | -0.244 | 0.05 | 0.387 |
| 08 | 0.298 | -0.595 | -2.331 | 0.695 |
| 09 | 1.373 | -4.427 | -3.579 | -4.427 |
| 10 | -2.74 | -3.733 | -1.024 | 1.268 |
| 11 | -3.213 | -3.916 | -2.144 | 1.341 |
| 12 | -1.391 | 0.278 | 0.702 | -0.885 |
| 13 | 0.712 | -1.44 | -1.164 | 0.345 |