Model info
Transcription factorSOX2
ModelSOX2_HUMAN.H10MO.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length16
Quality
B
ConsensusYYWTTSTbMTKSWdWh
wAUC
0.9121766775418748
Best AUC
0.9121766775418748
Benchmark datasets1
Aligned words678
TF familySOX-related factors{4.1.1}
TF subfamilyGroup B{4.1.1.2}
HGNC11195
EntrezGene6657
UniProt IDSOX2_HUMAN
UniProt ACP48431
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.9251
0.0005 4.9371
0.0001 7.0041
PCM
ACGT
0149.548425.1272.73686.376
0212.509446.21314.594160.463
03335.2693.4752.085292.951
041.395.563.475623.355
059.0350.04.17620.575
0655.5266.72498.33513.204
0759.2462.25935.54536.735
0870.809181.48972.196309.286
09406.683103.12226.9397.045
1015.81126.9328.497562.542
1139.79382.624402.504108.858
1238.924399.20799.04696.603
13421.79939.5334.665137.786
14350.29557.599132.22693.66
15438.47163.94460.46970.896
16157.709110.188103.316262.567
PWM
ACGT
01-1.1410.981-0.767-0.598
02-2.4281.029-2.290.013
030.744-3.449-3.7680.61
04-3.976-3.105-3.4491.362
05-2.71-4.597-3.3211.358
06-1.03-0.8511.139-2.38
07-0.967-3.722-1.461.213
08-0.7930.135-0.7740.664
090.936-0.424-1.724-0.484
10-2.218-1.724-1.6711.26
11-1.352-0.6420.926-0.371
12-1.3730.918-0.464-0.488
130.973-1.358-1.484-0.138
140.788-0.994-0.179-0.519
151.011-0.893-0.947-0.792
16-0.005-0.359-0.4220.501