Model info
| Transcription factor | SOX2 | ||||||||
| Model | SOX2_HUMAN.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 16 | ||||||||
| Quality | B | ||||||||
| Consensus | YYWTTSTbMTKSWdWh | ||||||||
| wAUC | 0.9121766775418748 | ||||||||
| Best AUC | 0.9121766775418748 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 678 | ||||||||
| TF family | SOX-related factors{4.1.1} | ||||||||
| TF subfamily | Group B{4.1.1.2} | ||||||||
| HGNC | 11195 | ||||||||
| EntrezGene | 6657 | ||||||||
| UniProt ID | SOX2_HUMAN | ||||||||
| UniProt AC | P48431 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 49.548 | 425.12 | 72.736 | 86.376 |
| 02 | 12.509 | 446.213 | 14.594 | 160.463 |
| 03 | 335.269 | 3.475 | 2.085 | 292.951 |
| 04 | 1.39 | 5.56 | 3.475 | 623.355 |
| 05 | 9.035 | 0.0 | 4.17 | 620.575 |
| 06 | 55.52 | 66.72 | 498.335 | 13.204 |
| 07 | 59.246 | 2.259 | 35.54 | 536.735 |
| 08 | 70.809 | 181.489 | 72.196 | 309.286 |
| 09 | 406.683 | 103.122 | 26.93 | 97.045 |
| 10 | 15.811 | 26.93 | 28.497 | 562.542 |
| 11 | 39.793 | 82.624 | 402.504 | 108.858 |
| 12 | 38.924 | 399.207 | 99.046 | 96.603 |
| 13 | 421.799 | 39.53 | 34.665 | 137.786 |
| 14 | 350.295 | 57.599 | 132.226 | 93.66 |
| 15 | 438.471 | 63.944 | 60.469 | 70.896 |
| 16 | 157.709 | 110.188 | 103.316 | 262.567 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.141 | 0.981 | -0.767 | -0.598 |
| 02 | -2.428 | 1.029 | -2.29 | 0.013 |
| 03 | 0.744 | -3.449 | -3.768 | 0.61 |
| 04 | -3.976 | -3.105 | -3.449 | 1.362 |
| 05 | -2.71 | -4.597 | -3.321 | 1.358 |
| 06 | -1.03 | -0.851 | 1.139 | -2.38 |
| 07 | -0.967 | -3.722 | -1.46 | 1.213 |
| 08 | -0.793 | 0.135 | -0.774 | 0.664 |
| 09 | 0.936 | -0.424 | -1.724 | -0.484 |
| 10 | -2.218 | -1.724 | -1.671 | 1.26 |
| 11 | -1.352 | -0.642 | 0.926 | -0.371 |
| 12 | -1.373 | 0.918 | -0.464 | -0.488 |
| 13 | 0.973 | -1.358 | -1.484 | -0.138 |
| 14 | 0.788 | -0.994 | -0.179 | -0.519 |
| 15 | 1.011 | -0.893 | -0.947 | -0.792 |
| 16 | -0.005 | -0.359 | -0.422 | 0.501 |