Model info
| Transcription factor | SOX17 | ||||||||
| Model | SOX17_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 18 | ||||||||
| Quality | D | ||||||||
| Consensus | MAMCAAWnhYYATTGTSv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 57 | ||||||||
| TF family | SOX-related factors{4.1.1} | ||||||||
| TF subfamily | Group F{4.1.1.6} | ||||||||
| HGNC | 18122 | ||||||||
| EntrezGene | 64321 | ||||||||
| UniProt ID | SOX17_HUMAN | ||||||||
| UniProt AC | Q9H6I2 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.487 | 39.435 | 4.554 | 4.554 |
| 02 | 45.231 | 8.901 | 2.898 | 0.0 |
| 03 | 37.365 | 17.699 | 0.0 | 1.967 |
| 04 | 21.632 | 35.398 | 0.0 | 0.0 |
| 05 | 48.232 | 8.798 | 0.0 | 0.0 |
| 06 | 42.229 | 0.0 | 3.002 | 11.799 |
| 07 | 14.697 | 0.0 | 5.9 | 36.433 |
| 08 | 11.799 | 16.768 | 15.732 | 12.731 |
| 09 | 14.697 | 17.699 | 5.9 | 18.734 |
| 10 | 14.697 | 20.701 | 0.0 | 21.632 |
| 11 | 3.933 | 40.263 | 1.967 | 10.868 |
| 12 | 57.03 | 0.0 | 0.0 | 0.0 |
| 13 | 0.0 | 0.0 | 0.0 | 57.03 |
| 14 | 0.0 | 0.0 | 0.0 | 57.03 |
| 15 | 0.0 | 0.0 | 57.03 | 0.0 |
| 16 | 0.0 | 0.0 | 0.0 | 57.03 |
| 17 | 0.0 | 40.366 | 11.799 | 4.865 |
| 18 | 8.927 | 23.21 | 16.069 | 8.824 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.475 | 0.974 | -1.009 | -1.009 |
| 02 | 1.108 | -0.432 | -1.363 | -2.715 |
| 03 | 0.922 | 0.203 | -2.715 | -1.635 |
| 04 | 0.394 | 0.869 | -2.715 | -2.715 |
| 05 | 1.171 | -0.443 | -2.715 | -2.715 |
| 06 | 1.041 | -2.715 | -1.336 | -0.176 |
| 07 | 0.028 | -2.715 | -0.793 | 0.897 |
| 08 | -0.176 | 0.152 | 0.092 | -0.105 |
| 09 | 0.028 | 0.203 | -0.793 | 0.257 |
| 10 | 0.028 | 0.352 | -2.715 | 0.394 |
| 11 | -1.128 | 0.994 | -1.635 | -0.251 |
| 12 | 1.335 | -2.715 | -2.715 | -2.715 |
| 13 | -2.715 | -2.715 | -2.715 | 1.335 |
| 14 | -2.715 | -2.715 | -2.715 | 1.335 |
| 15 | -2.715 | -2.715 | 1.335 | -2.715 |
| 16 | -2.715 | -2.715 | -2.715 | 1.335 |
| 17 | -2.715 | 0.997 | -0.176 | -0.955 |
| 18 | -0.429 | 0.461 | 0.112 | -0.44 |