Transcription factor | SOX13 | ||||||||
Model | SOX13_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 8 | ||||||||
Quality | D | ||||||||
Consensus | nATTGTKn | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 5 | ||||||||
TF family | SOX-related factors{4.1.1} | ||||||||
TF subfamily | Group D{4.1.1.4} | ||||||||
HGNC | 11192 | ||||||||
EntrezGene | 9580 | ||||||||
UniProt ID | SOX13_HUMAN | ||||||||
UniProt AC | Q9UN79 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 0.804 | 1.875 | 0.804 | 1.518 |
02 | 3.929 | 0.0 | 0.0 | 1.071 |
03 | 0.0 | 0.0 | 0.0 | 5.0 |
04 | 0.0 | 0.0 | 0.0 | 5.0 |
05 | 1.071 | 0.0 | 3.929 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 5.0 |
07 | 0.0 | 0.714 | 1.071 | 3.214 |
08 | 0.804 | 1.875 | 0.804 | 1.518 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.315 | 0.321 | -0.315 | 0.15 |
02 | 0.964 | -1.413 | -1.413 | -0.114 |
03 | -1.413 | -1.413 | -1.413 | 1.185 |
04 | -1.413 | -1.413 | -1.413 | 1.185 |
05 | -0.114 | -1.413 | 0.964 | -1.413 |
06 | -1.413 | -1.413 | -1.413 | 1.185 |
07 | -1.413 | -0.392 | -0.114 | 0.783 |
08 | -0.315 | 0.321 | -0.315 | 0.15 |