Model info
| Transcription factor | SOX11 | ||||||||
| Model | SOX11_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Consensus | RACAMTRhMATTGTYb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 220 | ||||||||
| TF family | SOX-related factors{4.1.1} | ||||||||
| TF subfamily | Group C{4.1.1.3} | ||||||||
| HGNC | 11191 | ||||||||
| EntrezGene | 6664 | ||||||||
| UniProt ID | SOX11_HUMAN | ||||||||
| UniProt AC | P35716 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 131.5 | 34.5 | 39.5 | 14.5 |
| 02 | 190.25 | 11.25 | 5.25 | 13.25 |
| 03 | 5.5 | 197.5 | 9.5 | 7.5 |
| 04 | 199.0 | 6.0 | 4.0 | 11.0 |
| 05 | 121.5 | 93.5 | 2.5 | 2.5 |
| 06 | 0.75 | 1.75 | 0.75 | 216.75 |
| 07 | 60.25 | 8.25 | 151.25 | 0.25 |
| 08 | 86.0 | 92.0 | 16.0 | 26.0 |
| 09 | 137.0 | 71.0 | 0.0 | 12.0 |
| 10 | 220.0 | 0.0 | 0.0 | 0.0 |
| 11 | 0.0 | 7.0 | 0.0 | 213.0 |
| 12 | 0.0 | 4.0 | 0.0 | 216.0 |
| 13 | 3.25 | 8.25 | 208.25 | 0.25 |
| 14 | 12.5 | 11.5 | 0.5 | 195.5 |
| 15 | 10.0 | 32.0 | 30.0 | 148.0 |
| 16 | 33.5 | 77.5 | 40.5 | 68.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.858 | -0.452 | -0.322 | -1.268 |
| 02 | 1.224 | -1.498 | -2.145 | -1.351 |
| 03 | -2.108 | 1.261 | -1.648 | -1.851 |
| 04 | 1.269 | -2.037 | -2.355 | -1.518 |
| 05 | 0.779 | 0.521 | -2.684 | -2.684 |
| 06 | -3.29 | -2.901 | -3.29 | 1.353 |
| 07 | 0.089 | -1.77 | 0.996 | -3.563 |
| 08 | 0.438 | 0.505 | -1.178 | -0.723 |
| 09 | 0.898 | 0.25 | -3.733 | -1.44 |
| 10 | 1.368 | -3.733 | -3.733 | -3.733 |
| 11 | -3.733 | -1.909 | -3.733 | 1.336 |
| 12 | -3.733 | -2.355 | -3.733 | 1.35 |
| 13 | -2.506 | -1.77 | 1.314 | -3.563 |
| 14 | -1.403 | -1.478 | -3.417 | 1.251 |
| 15 | -1.602 | -0.525 | -0.586 | 0.975 |
| 16 | -0.481 | 0.336 | -0.298 | 0.215 |