Model info
| Transcription factor | Snai2 | ||||||||
| Model | SNAI2_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 7 | ||||||||
| Quality | C | ||||||||
| Consensus | nCAGGTG | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 6 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | Snail-like factors{2.3.3.2} | ||||||||
| MGI | 1096393 | ||||||||
| EntrezGene | 20583 | ||||||||
| UniProt ID | SNAI2_MOUSE | ||||||||
| UniProt AC | P97469 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.25 | 2.25 | 1.25 | 2.25 |
| 02 | 0.0 | 6.0 | 0.0 | 0.0 |
| 03 | 6.0 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 0.0 | 6.0 | 0.0 |
| 05 | 0.0 | 0.0 | 6.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 6.0 |
| 07 | 0.0 | 0.0 | 6.0 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.026 | 0.326 | -0.137 | 0.326 |
| 02 | -1.47 | 1.197 | -1.47 | -1.47 |
| 03 | 1.197 | -1.47 | -1.47 | -1.47 |
| 04 | -1.47 | -1.47 | 1.197 | -1.47 |
| 05 | -1.47 | -1.47 | 1.197 | -1.47 |
| 06 | -1.47 | -1.47 | -1.47 | 1.197 |
| 07 | -1.47 | -1.47 | 1.197 | -1.47 |