Model info
| Transcription factor | Smarcc1 | ||||||||
| Model | SMRC1_MOUSE.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Consensus | vTGAGTCAb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 2119 | ||||||||
| TF family | Myb/SANT domain factors{3.5.1} | ||||||||
| TF subfamily | TADA2-like factors{3.5.1.6} | ||||||||
| MGI | 1203524 | ||||||||
| EntrezGene | 20588 | ||||||||
| UniProt ID | SMRC1_MOUSE | ||||||||
| UniProt AC | P97496 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 556.419 | 741.024 | 617.568 | 200.989 |
| 02 | 106.697 | 14.868 | 103.002 | 1891.433 |
| 03 | 33.43 | 25.559 | 1970.483 | 86.528 |
| 04 | 1982.834 | 30.128 | 54.883 | 48.155 |
| 05 | 271.882 | 0.0 | 1844.118 | 0.0 |
| 06 | 149.033 | 57.257 | 195.617 | 1714.093 |
| 07 | 70.733 | 1976.462 | 44.228 | 24.577 |
| 08 | 1963.308 | 83.334 | 14.921 | 54.437 |
| 09 | 128.507 | 840.492 | 524.953 | 622.047 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.05 | 0.336 | 0.154 | -0.962 |
| 02 | -1.587 | -3.454 | -1.621 | 1.272 |
| 03 | -2.709 | -2.961 | 1.312 | -1.792 |
| 04 | 1.319 | -2.808 | -2.235 | -2.361 |
| 05 | -0.662 | -5.625 | 1.246 | -5.625 |
| 06 | -1.258 | -2.194 | -0.989 | 1.173 |
| 07 | -1.989 | 1.315 | -2.443 | -2.998 |
| 08 | 1.309 | -1.829 | -3.451 | -2.243 |
| 09 | -1.404 | 0.462 | -0.008 | 0.161 |