Model info
| Transcription factor | SMAD4 | ||||||||
| Model | SMAD4_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Consensus | bWGKCTvdCWSYY | ||||||||
| wAUC | 0.8169656712227896 | ||||||||
| Best AUC | 0.8169656712227896 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | SMAD factors{7.1.1} | ||||||||
| TF subfamily | Co-activating Smads (Co-Smad){7.1.1.2} | ||||||||
| HGNC | 6770 | ||||||||
| EntrezGene | 4089 | ||||||||
| UniProt ID | SMAD4_HUMAN | ||||||||
| UniProt AC | Q13485 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 77.259 | 207.478 | 129.058 | 86.205 |
| 02 | 139.566 | 48.758 | 24.743 | 286.934 |
| 03 | 9.565 | 6.667 | 475.236 | 8.532 |
| 04 | 7.214 | 40.876 | 79.813 | 372.097 |
| 05 | 3.797 | 484.58 | 1.374 | 10.249 |
| 06 | 8.956 | 2.853 | 0.974 | 487.217 |
| 07 | 107.203 | 121.192 | 242.216 | 29.389 |
| 08 | 118.813 | 55.639 | 153.992 | 171.557 |
| 09 | 7.813 | 465.883 | 15.766 | 10.538 |
| 10 | 372.36 | 35.038 | 31.928 | 60.674 |
| 11 | 21.04 | 391.337 | 62.637 | 24.987 |
| 12 | 73.947 | 308.857 | 8.952 | 108.243 |
| 13 | 66.119 | 78.325 | 52.65 | 302.905 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.474 | 0.502 | 0.032 | -0.366 |
| 02 | 0.109 | -0.922 | -1.571 | 0.824 |
| 03 | -2.432 | -2.734 | 1.326 | -2.53 |
| 04 | -2.67 | -1.093 | -0.442 | 1.083 |
| 05 | -3.163 | 1.346 | -3.767 | -2.372 |
| 06 | -2.488 | -3.358 | -3.913 | 1.351 |
| 07 | -0.152 | -0.031 | 0.656 | -1.409 |
| 08 | -0.05 | -0.794 | 0.206 | 0.313 |
| 09 | -2.604 | 1.307 | -1.989 | -2.348 |
| 10 | 1.083 | -1.241 | -1.33 | -0.71 |
| 11 | -1.723 | 1.133 | -0.679 | -1.562 |
| 12 | -0.517 | 0.897 | -2.489 | -0.142 |
| 13 | -0.626 | -0.46 | -0.848 | 0.878 |