Model info
| Transcription factor | SMAD3 | ||||||||
| Model | SMAD3_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Consensus | vhGTCTGbvb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 74 | ||||||||
| TF family | SMAD factors{7.1.1} | ||||||||
| TF subfamily | Regulatory Smads (R-Smad){7.1.1.1} | ||||||||
| HGNC | 6769 | ||||||||
| EntrezGene | 4088 | ||||||||
| UniProt ID | SMAD3_HUMAN | ||||||||
| UniProt AC | P84022 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 13.172 | 17.973 | 31.637 | 10.218 |
| 02 | 15.757 | 8.863 | 7.017 | 41.363 |
| 03 | 0.985 | 6.648 | 63.398 | 1.97 |
| 04 | 0.0 | 0.0 | 7.14 | 65.86 |
| 05 | 0.0 | 72.015 | 0.0 | 0.985 |
| 06 | 3.447 | 1.847 | 0.985 | 66.722 |
| 07 | 7.632 | 0.0 | 60.567 | 4.801 |
| 08 | 7.509 | 15.388 | 32.007 | 18.096 |
| 09 | 16.25 | 40.132 | 10.341 | 6.278 |
| 10 | 7.14 | 28.806 | 11.941 | 25.113 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.305 | -0.014 | 0.526 | -0.537 |
| 02 | -0.138 | -0.665 | -0.871 | 0.787 |
| 03 | -2.24 | -0.917 | 1.205 | -1.849 |
| 04 | -2.891 | -2.891 | -0.856 | 1.242 |
| 05 | -2.891 | 1.33 | -2.891 | -2.24 |
| 06 | -1.453 | -1.89 | -2.24 | 1.255 |
| 07 | -0.797 | -2.891 | 1.16 | -1.191 |
| 08 | -0.812 | -0.16 | 0.538 | -0.008 |
| 09 | -0.109 | 0.757 | -0.527 | -0.966 |
| 10 | -0.856 | 0.436 | -0.395 | 0.304 |