Model info
Transcription factorSmad2
ModelSMAD2_MOUSE.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length11
Quality
D
ConsensusKKGKCYGKMTv
wAUC
Best AUC
Benchmark datasets
Aligned words18
TF familySMAD factors{7.1.1}
TF subfamilyRegulatory Smads (R-Smad){7.1.1.1}
MGI108051
EntrezGene17126
UniProt IDSMAD2_MOUSE
UniProt ACQ62432
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.0021
0.0005 5.6521
0.0001 6.9681
PCM
ACGT
012.2251.20810.4914.26
020.02.0353.05213.098
030.04.06914.1160.0
040.01.785.21411.191
050.018.1850.00.0
063.8157.2490.07.121
070.00.018.1850.0
080.01.0178.1399.029
093.05213.3531.780.0
101.0171.0171.01715.133
114.1974.0697.8842.035
PWM
ACGT
01-0.58-1.0030.755-0.056
02-1.984-0.647-0.3330.964
03-1.984-0.0951.035-1.984
04-1.984-0.7440.1190.816
05-1.9841.277-1.984-1.984
06-0.1490.414-1.9840.398
07-1.984-1.9841.277-1.984
08-1.984-1.1070.520.615
09-0.3330.982-0.744-1.984
10-1.107-1.107-1.1071.101
11-0.069-0.0950.491-0.647