Transcription factor | Smad2 | ||||||||
Model | SMAD2_MOUSE.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 11 | ||||||||
Quality | D | ||||||||
Consensus | KKGKCYGKMTv | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 18 | ||||||||
TF family | SMAD factors{7.1.1} | ||||||||
TF subfamily | Regulatory Smads (R-Smad){7.1.1.1} | ||||||||
MGI | 108051 | ||||||||
EntrezGene | 17126 | ||||||||
UniProt ID | SMAD2_MOUSE | ||||||||
UniProt AC | Q62432 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 2.225 | 1.208 | 10.491 | 4.26 |
02 | 0.0 | 2.035 | 3.052 | 13.098 |
03 | 0.0 | 4.069 | 14.116 | 0.0 |
04 | 0.0 | 1.78 | 5.214 | 11.191 |
05 | 0.0 | 18.185 | 0.0 | 0.0 |
06 | 3.815 | 7.249 | 0.0 | 7.121 |
07 | 0.0 | 0.0 | 18.185 | 0.0 |
08 | 0.0 | 1.017 | 8.139 | 9.029 |
09 | 3.052 | 13.353 | 1.78 | 0.0 |
10 | 1.017 | 1.017 | 1.017 | 15.133 |
11 | 4.197 | 4.069 | 7.884 | 2.035 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.58 | -1.003 | 0.755 | -0.056 |
02 | -1.984 | -0.647 | -0.333 | 0.964 |
03 | -1.984 | -0.095 | 1.035 | -1.984 |
04 | -1.984 | -0.744 | 0.119 | 0.816 |
05 | -1.984 | 1.277 | -1.984 | -1.984 |
06 | -0.149 | 0.414 | -1.984 | 0.398 |
07 | -1.984 | -1.984 | 1.277 | -1.984 |
08 | -1.984 | -1.107 | 0.52 | 0.615 |
09 | -0.333 | 0.982 | -0.744 | -1.984 |
10 | -1.107 | -1.107 | -1.107 | 1.101 |
11 | -0.069 | -0.095 | 0.491 | -0.647 |