Model info
Transcription factorSMAD2
ModelSMAD2_HUMAN.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginChIP-Seq
Model length12
Quality
C
ConsensusWGKCTSdCWSYY
wAUC
0.7427737472447744
Best AUC
0.7764081134170354
Benchmark datasets3
Aligned words500
TF familySMAD factors{7.1.1}
TF subfamilyRegulatory Smads (R-Smad){7.1.1.1}
HGNC6768
EntrezGene4087
UniProt IDSMAD2_HUMAN
UniProt ACQ15796
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.5961
0.0005 5.4711
0.0001 7.2351
PCM
ACGT
01138.3349.74427.792284.135
0210.36812.335458.59718.7
0328.248.33260.849362.619
049.867472.4611.51316.16
056.471.1470.883491.5
0695.804110.872275.04418.28
07106.96853.451148.4191.181
0810.326449.43628.04512.193
09370.69724.80911.8292.674
1034.112365.91168.85131.126
1172.986282.6629.959134.393
1256.632107.67132.241303.455
PWM
ACGT
010.1-0.903-1.4620.814
02-2.362-2.211.291-1.832
03-1.448-0.931-0.7071.057
04-2.4051.321-3.72-1.966
05-2.758-3.847-3.951.36
06-0.262-0.1180.782-1.853
07-0.154-0.8330.170.421
08-2.3661.271-1.453-2.22
091.079-1.569-2.247-0.295
10-1.2661.066-0.586-1.354
11-0.5290.809-2.3970.072
12-0.777-0.147-1.320.88