Model info
| Transcription factor | SMAD2 | ||||||||
| Model | SMAD2_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Consensus | WGKCTSdCWSYY | ||||||||
| wAUC | 0.7427737472447744 | ||||||||
| Best AUC | 0.7764081134170354 | ||||||||
| Benchmark datasets | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | SMAD factors{7.1.1} | ||||||||
| TF subfamily | Regulatory Smads (R-Smad){7.1.1.1} | ||||||||
| HGNC | 6768 | ||||||||
| EntrezGene | 4087 | ||||||||
| UniProt ID | SMAD2_HUMAN | ||||||||
| UniProt AC | Q15796 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 138.33 | 49.744 | 27.792 | 284.135 |
| 02 | 10.368 | 12.335 | 458.597 | 18.7 |
| 03 | 28.2 | 48.332 | 60.849 | 362.619 |
| 04 | 9.867 | 472.461 | 1.513 | 16.16 |
| 05 | 6.47 | 1.147 | 0.883 | 491.5 |
| 06 | 95.804 | 110.872 | 275.044 | 18.28 |
| 07 | 106.968 | 53.451 | 148.4 | 191.181 |
| 08 | 10.326 | 449.436 | 28.045 | 12.193 |
| 09 | 370.697 | 24.809 | 11.82 | 92.674 |
| 10 | 34.112 | 365.911 | 68.851 | 31.126 |
| 11 | 72.986 | 282.662 | 9.959 | 134.393 |
| 12 | 56.632 | 107.671 | 32.241 | 303.455 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.1 | -0.903 | -1.462 | 0.814 |
| 02 | -2.362 | -2.21 | 1.291 | -1.832 |
| 03 | -1.448 | -0.931 | -0.707 | 1.057 |
| 04 | -2.405 | 1.321 | -3.72 | -1.966 |
| 05 | -2.758 | -3.847 | -3.95 | 1.36 |
| 06 | -0.262 | -0.118 | 0.782 | -1.853 |
| 07 | -0.154 | -0.833 | 0.17 | 0.421 |
| 08 | -2.366 | 1.271 | -1.453 | -2.22 |
| 09 | 1.079 | -1.569 | -2.247 | -0.295 |
| 10 | -1.266 | 1.066 | -0.586 | -1.354 |
| 11 | -0.529 | 0.809 | -2.397 | 0.072 |
| 12 | -0.777 | -0.147 | -1.32 | 0.88 |