Model info
| Transcription factor | SHOX | ||||||||
| Model | SHOX_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | bTAATTARbhhWWWWdd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 17808 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | SHOX{3.1.3.25} | ||||||||
| HGNC | 10853 | ||||||||
| EntrezGene | 6473 | ||||||||
| UniProt ID | SHOX_HUMAN | ||||||||
| UniProt AC | O15266 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1400.5 | 7005.5 | 2380.5 | 6993.5 |
| 02 | 240.25 | 385.25 | 235.25 | 16919.25 |
| 03 | 17775.75 | 0.75 | 2.75 | 0.75 |
| 04 | 17779.0 | 0.0 | 1.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 17780.0 |
| 06 | 2.0 | 0.0 | 4.0 | 17774.0 |
| 07 | 10519.0 | 1.0 | 7259.0 | 1.0 |
| 08 | 5614.0 | 2365.0 | 9494.0 | 307.0 |
| 09 | 1859.5 | 6191.5 | 2135.5 | 7593.5 |
| 10 | 2823.75 | 4291.75 | 1847.75 | 8816.75 |
| 11 | 7510.0 | 3408.0 | 1222.0 | 5640.0 |
| 12 | 9761.5 | 1607.5 | 461.5 | 5949.5 |
| 13 | 8053.75 | 325.75 | 82.75 | 9317.75 |
| 14 | 7664.0 | 90.0 | 78.0 | 9948.0 |
| 15 | 7908.5 | 397.5 | 813.5 | 8660.5 |
| 16 | 6070.25 | 1308.25 | 2060.25 | 8341.25 |
| 17 | 5411.25 | 2412.25 | 3664.25 | 6292.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.154 | 0.455 | -0.624 | 0.453 |
| 02 | -2.908 | -2.44 | -2.929 | 1.336 |
| 03 | 1.386 | -7.238 | -6.752 | -7.238 |
| 04 | 1.386 | -7.505 | -7.163 | -7.505 |
| 05 | -7.505 | -7.505 | -7.505 | 1.386 |
| 06 | -6.908 | -7.505 | -6.537 | 1.386 |
| 07 | 0.861 | -7.163 | 0.49 | -7.163 |
| 08 | 0.233 | -0.631 | 0.759 | -2.665 |
| 09 | -0.871 | 0.331 | -0.732 | 0.535 |
| 10 | -0.453 | -0.035 | -0.877 | 0.685 |
| 11 | 0.524 | -0.265 | -1.29 | 0.238 |
| 12 | 0.786 | -1.016 | -2.26 | 0.291 |
| 13 | 0.594 | -2.606 | -3.955 | 0.74 |
| 14 | 0.545 | -3.873 | -4.012 | 0.805 |
| 15 | 0.576 | -2.409 | -1.696 | 0.667 |
| 16 | 0.311 | -1.222 | -0.768 | 0.629 |
| 17 | 0.197 | -0.611 | -0.193 | 0.347 |