Model info
| Transcription factor | Rxrg | ||||||||
| Model | RXRG_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 17 | ||||||||
| Quality | C | ||||||||
| Consensus | RAGKTCAAGGhYRbbbY | ||||||||
| wAUC | 0.848851531419049 | ||||||||
| Best AUC | 0.848851531419049 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 509 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B){2.1.3.1} | ||||||||
| MGI | 98216 | ||||||||
| EntrezGene | 20183 | ||||||||
| UniProt ID | RXRG_MOUSE | ||||||||
| UniProt AC | P28705 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 196.963 | 31.664 | 249.061 | 22.311 |
| 02 | 385.233 | 4.105 | 88.543 | 22.119 |
| 03 | 19.826 | 10.331 | 451.93 | 17.912 |
| 04 | 14.006 | 19.769 | 183.822 | 282.403 |
| 05 | 21.512 | 24.895 | 14.564 | 439.029 |
| 06 | 15.1 | 455.322 | 21.854 | 7.724 |
| 07 | 473.168 | 9.305 | 12.302 | 5.226 |
| 08 | 402.958 | 22.924 | 70.143 | 3.975 |
| 09 | 60.103 | 2.199 | 432.056 | 5.642 |
| 10 | 10.774 | 27.079 | 446.633 | 15.513 |
| 11 | 70.76 | 109.512 | 38.658 | 281.071 |
| 12 | 26.556 | 370.368 | 49.129 | 53.946 |
| 13 | 382.735 | 24.972 | 53.109 | 39.184 |
| 14 | 57.785 | 69.526 | 249.297 | 123.392 |
| 15 | 39.611 | 224.163 | 146.707 | 89.52 |
| 16 | 62.961 | 254.477 | 75.274 | 107.288 |
| 17 | 53.75 | 102.39 | 46.171 | 297.689 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.45 | -1.338 | 0.683 | -1.668 |
| 02 | 1.117 | -3.107 | -0.34 | -1.676 |
| 03 | -1.778 | -2.365 | 1.276 | -1.872 |
| 04 | -2.096 | -1.781 | 0.382 | 0.808 |
| 05 | -1.702 | -1.565 | -2.061 | 1.247 |
| 06 | -2.028 | 1.284 | -1.688 | -2.613 |
| 07 | 1.322 | -2.456 | -2.212 | -2.927 |
| 08 | 1.162 | -1.643 | -0.568 | -3.131 |
| 09 | -0.719 | -3.518 | 1.231 | -2.867 |
| 10 | -2.329 | -1.486 | 1.265 | -2.004 |
| 11 | -0.56 | -0.131 | -1.147 | 0.803 |
| 12 | -1.505 | 1.078 | -0.915 | -0.824 |
| 13 | 1.111 | -1.563 | -0.839 | -1.134 |
| 14 | -0.757 | -0.577 | 0.684 | -0.013 |
| 15 | -1.123 | 0.579 | 0.158 | -0.329 |
| 16 | -0.674 | 0.705 | -0.499 | -0.151 |
| 17 | -0.828 | -0.197 | -0.975 | 0.861 |