Model info
| Transcription factor | Rxrg | ||||||||
| Model | RXRG_MOUSE.H10DI.C | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 23 | ||||||||
| Quality | C | ||||||||
| Consensus | vddvdbbvdRAGKTCARGGhYRb | ||||||||
| wAUC | 0.8616538648421981 | ||||||||
| Best AUC | 0.8616538648421981 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 520 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B){2.1.3.1} | ||||||||
| MGI | 98216 | ||||||||
| EntrezGene | 20183 | ||||||||
| UniProt ID | RXRG_MOUSE | ||||||||
| UniProt AC | P28705 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 48.658 | 5.986 | 53.43 | 8.436 | 39.079 | 11.686 | 6.942 | 18.672 | 122.021 | 10.412 | 78.775 | 22.929 | 12.991 | 8.446 | 43.083 | 8.453 |
| 02 | 59.873 | 15.469 | 125.191 | 22.218 | 22.679 | 2.889 | 0.864 | 10.098 | 43.895 | 18.536 | 63.106 | 56.694 | 16.089 | 9.578 | 17.603 | 15.219 |
| 03 | 16.303 | 26.396 | 94.933 | 4.903 | 15.74 | 17.604 | 4.14 | 8.989 | 42.937 | 16.985 | 137.351 | 9.492 | 7.101 | 50.248 | 39.871 | 7.008 |
| 04 | 19.849 | 8.511 | 39.881 | 13.84 | 67.548 | 15.047 | 3.554 | 25.084 | 98.728 | 22.247 | 130.237 | 25.082 | 5.031 | 10.236 | 9.753 | 5.371 |
| 05 | 26.575 | 28.422 | 47.412 | 88.748 | 13.664 | 11.212 | 1.871 | 29.295 | 16.762 | 26.207 | 39.393 | 101.063 | 5.536 | 29.067 | 14.893 | 19.881 |
| 06 | 14.301 | 21.332 | 22.519 | 4.385 | 29.028 | 33.034 | 1.746 | 31.1 | 21.766 | 29.22 | 31.765 | 20.817 | 8.335 | 152.449 | 41.581 | 36.621 |
| 07 | 22.684 | 17.196 | 24.012 | 9.538 | 156.427 | 35.979 | 12.021 | 31.608 | 23.912 | 20.927 | 31.104 | 21.668 | 20.399 | 36.775 | 30.158 | 5.592 |
| 08 | 49.864 | 20.284 | 144.327 | 8.946 | 56.324 | 22.685 | 4.484 | 27.384 | 27.378 | 13.679 | 24.566 | 31.672 | 17.6 | 17.4 | 24.837 | 8.569 |
| 09 | 49.591 | 8.377 | 84.498 | 8.701 | 54.854 | 1.949 | 8.571 | 8.674 | 84.916 | 13.063 | 97.043 | 3.193 | 11.654 | 8.6 | 54.514 | 1.804 |
| 10 | 164.579 | 3.869 | 30.798 | 1.768 | 26.486 | 2.853 | 2.65 | 0.0 | 208.578 | 1.039 | 31.44 | 3.569 | 10.907 | 1.341 | 7.339 | 2.784 |
| 11 | 10.031 | 2.667 | 394.825 | 3.026 | 2.427 | 1.039 | 1.828 | 3.808 | 2.541 | 1.41 | 62.35 | 5.926 | 0.0 | 0.986 | 7.134 | 0.0 |
| 12 | 2.33 | 2.596 | 5.478 | 4.595 | 0.0 | 0.864 | 0.939 | 4.299 | 16.184 | 9.241 | 181.827 | 258.887 | 0.0 | 0.0 | 10.612 | 2.148 |
| 13 | 0.0 | 1.152 | 1.728 | 15.633 | 0.818 | 1.125 | 0.0 | 10.757 | 2.892 | 18.355 | 10.037 | 167.572 | 1.703 | 6.485 | 4.74 | 257.002 |
| 14 | 1.995 | 0.818 | 0.922 | 1.677 | 1.134 | 24.004 | 1.979 | 0.0 | 6.489 | 6.262 | 0.864 | 2.89 | 4.784 | 424.138 | 13.337 | 8.706 |
| 15 | 8.909 | 0.793 | 4.7 | 0.0 | 443.628 | 5.515 | 3.11 | 2.969 | 9.152 | 1.161 | 5.032 | 1.758 | 8.476 | 3.858 | 0.939 | 0.0 |
| 16 | 363.296 | 24.928 | 63.091 | 18.85 | 2.754 | 1.014 | 0.864 | 6.694 | 6.327 | 2.703 | 2.901 | 1.85 | 1.125 | 0.793 | 1.051 | 1.758 |
| 17 | 22.61 | 0.0 | 343.777 | 7.116 | 10.216 | 4.993 | 12.173 | 2.056 | 10.269 | 4.522 | 46.039 | 7.077 | 0.818 | 1.813 | 22.731 | 3.79 |
| 18 | 6.226 | 7.799 | 28.605 | 1.284 | 3.184 | 3.33 | 0.904 | 3.911 | 11.161 | 13.68 | 391.073 | 8.807 | 0.904 | 0.0 | 16.357 | 2.778 |
| 19 | 4.77 | 3.319 | 7.349 | 6.037 | 4.331 | 4.104 | 3.045 | 13.329 | 54.914 | 90.495 | 44.58 | 246.948 | 2.034 | 5.898 | 2.858 | 5.99 |
| 20 | 7.775 | 30.485 | 19.443 | 8.347 | 14.354 | 74.859 | 0.818 | 13.784 | 0.0 | 28.144 | 21.115 | 8.574 | 4.7 | 208.497 | 21.578 | 37.528 |
| 21 | 13.567 | 3.425 | 6.294 | 3.544 | 287.962 | 14.467 | 17.954 | 21.602 | 24.42 | 4.663 | 19.952 | 13.919 | 31.494 | 13.428 | 18.136 | 5.176 |
| 22 | 50.9 | 62.818 | 147.356 | 96.367 | 15.556 | 5.892 | 4.539 | 9.995 | 8.294 | 9.741 | 26.446 | 17.854 | 2.014 | 10.062 | 26.797 | 5.368 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 0.438 | -1.602 | 0.531 | -1.277 | 0.221 | -0.963 | -1.462 | -0.507 | 1.353 | -1.075 | 0.917 | -0.305 | -0.861 | -1.276 | 0.318 | -1.275 |
| 02 | 0.644 | -0.691 | 1.379 | -0.336 | -0.316 | -2.267 | -3.229 | -1.104 | 0.336 | -0.514 | 0.697 | 0.59 | -0.652 | -1.155 | -0.564 | -0.707 |
| 03 | -0.639 | -0.167 | 1.103 | -1.788 | -0.674 | -0.564 | -1.944 | -1.216 | 0.314 | -0.599 | 1.471 | -1.164 | -1.441 | 0.47 | 0.241 | -1.453 |
| 04 | -0.447 | -1.268 | 0.241 | -0.799 | 0.764 | -0.718 | -2.083 | -0.217 | 1.142 | -0.335 | 1.418 | -0.217 | -1.764 | -1.091 | -1.138 | -1.704 |
| 05 | -0.16 | -0.094 | 0.413 | 1.036 | -0.812 | -1.003 | -2.639 | -0.064 | -0.612 | -0.174 | 0.229 | 1.165 | -1.675 | -0.071 | -0.728 | -0.445 |
| 06 | -0.767 | -0.376 | -0.323 | -1.891 | -0.073 | 0.055 | -2.696 | -0.005 | -0.356 | -0.066 | 0.016 | -0.4 | -1.288 | 1.575 | 0.283 | 0.157 |
| 07 | -0.316 | -0.587 | -0.26 | -1.159 | 1.601 | 0.139 | -0.936 | 0.011 | -0.264 | -0.395 | -0.005 | -0.361 | -0.42 | 0.161 | -0.035 | -1.666 |
| 08 | 0.463 | -0.426 | 1.52 | -1.221 | 0.584 | -0.316 | -1.871 | -0.13 | -0.131 | -0.81 | -0.237 | 0.013 | -0.565 | -0.576 | -0.227 | -1.262 |
| 09 | 0.457 | -1.284 | 0.987 | -1.247 | 0.557 | -2.605 | -1.262 | -1.25 | 0.992 | -0.855 | 1.125 | -2.179 | -0.966 | -1.258 | 0.551 | -2.669 |
| 10 | 1.651 | -2.006 | -0.014 | -2.686 | -0.163 | -2.278 | -2.343 | -4.4 | 1.888 | -3.098 | 0.006 | -2.079 | -1.03 | -2.906 | -1.41 | -2.3 |
| 11 | -1.111 | -2.337 | 2.525 | -2.226 | -2.419 | -3.098 | -2.658 | -2.02 | -2.379 | -2.868 | 0.685 | -1.611 | -4.4 | -3.136 | -1.436 | -4.4 |
| 12 | -2.454 | -2.361 | -1.685 | -1.848 | -4.4 | -3.229 | -3.171 | -1.909 | -0.647 | -1.19 | 1.751 | 2.104 | -4.4 | -4.4 | -1.056 | -2.524 |
| 13 | -4.4 | -3.022 | -2.705 | -0.68 | -3.266 | -3.04 | -4.4 | -1.043 | -2.266 | -0.524 | -1.11 | 1.669 | -2.717 | -1.527 | -1.82 | 2.096 |
| 14 | -2.586 | -3.266 | -3.184 | -2.729 | -3.034 | -0.26 | -2.593 | -4.4 | -1.526 | -1.56 | -3.229 | -2.267 | -1.811 | 2.597 | -0.835 | -1.247 |
| 15 | -1.225 | -3.288 | -1.827 | -4.4 | 2.641 | -1.679 | -2.202 | -2.243 | -1.199 | -3.017 | -1.764 | -2.691 | -1.272 | -2.008 | -3.171 | -4.4 |
| 16 | 2.442 | -0.223 | 0.696 | -0.497 | -2.309 | -3.116 | -3.229 | -1.497 | -1.55 | -2.326 | -2.264 | -2.649 | -3.04 | -3.288 | -3.09 | -2.691 |
| 17 | -0.319 | -4.4 | 2.387 | -1.439 | -1.093 | -1.771 | -0.924 | -2.561 | -1.088 | -1.863 | 0.384 | -1.444 | -3.266 | -2.665 | -0.314 | -2.025 |
| 18 | -1.565 | -1.352 | -0.087 | -2.94 | -2.181 | -2.141 | -3.198 | -1.996 | -1.008 | -0.81 | 2.516 | -1.236 | -3.198 | -4.4 | -0.636 | -2.302 |
| 19 | -1.814 | -2.144 | -1.408 | -1.594 | -1.903 | -1.952 | -2.221 | -0.836 | 0.558 | 1.055 | 0.352 | 2.056 | -2.569 | -1.616 | -2.277 | -1.601 |
| 20 | -1.355 | -0.024 | -0.467 | -1.287 | -0.764 | 0.866 | -3.266 | -0.803 | -4.4 | -0.103 | -0.386 | -1.261 | -1.827 | 1.887 | -0.365 | 0.181 |
| 21 | -0.819 | -2.116 | -1.555 | -2.085 | 2.21 | -0.756 | -0.545 | -0.364 | -0.243 | -1.835 | -0.442 | -0.794 | 0.008 | -0.829 | -0.535 | -1.738 |
| 22 | 0.483 | 0.692 | 1.541 | 1.118 | -0.685 | -1.617 | -1.86 | -1.114 | -1.293 | -1.139 | -0.165 | -0.551 | -2.578 | -1.108 | -0.152 | -1.704 |