Transcription factor | RXRG | ||||||||
Model | RXRG_HUMAN.H10MO.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 13 | ||||||||
Quality | B | ||||||||
Consensus | bGTCAAAGGTCAh | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 584 | ||||||||
TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
TF subfamily | Retinoid X receptors (NR2B){2.1.3.1} | ||||||||
HGNC | 10479 | ||||||||
EntrezGene | 6258 | ||||||||
UniProt ID | RXRG_HUMAN | ||||||||
UniProt AC | P48443 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 102.04 | 102.465 | 345.61 | 102.889 |
02 | 0.849 | 0.424 | 571.639 | 80.092 |
03 | 4.069 | 9.379 | 50.467 | 589.09 |
04 | 3.82 | 583.765 | 13.179 | 52.24 |
05 | 653.004 | 0.0 | 0.0 | 0.0 |
06 | 594.166 | 2.619 | 47.945 | 8.274 |
07 | 633.223 | 0.849 | 18.932 | 0.0 |
08 | 0.0 | 0.424 | 651.731 | 0.849 |
09 | 0.424 | 0.424 | 596.144 | 56.011 |
10 | 9.195 | 11.501 | 15.811 | 616.497 |
11 | 2.971 | 561.382 | 49.464 | 39.186 |
12 | 605.969 | 3.644 | 42.718 | 0.673 |
13 | 190.564 | 215.256 | 67.043 | 180.142 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.464 | -0.46 | 0.745 | -0.456 |
02 | -4.201 | -4.39 | 1.246 | -0.702 |
03 | -3.367 | -2.707 | -1.152 | 1.276 |
04 | -3.411 | 1.267 | -2.411 | -1.119 |
05 | 1.379 | -4.622 | -4.622 | -4.622 |
06 | 1.285 | -3.661 | -1.202 | -2.813 |
07 | 1.348 | -4.201 | -2.082 | -4.622 |
08 | -4.622 | -4.39 | 1.377 | -4.201 |
09 | -4.39 | -4.39 | 1.288 | -1.051 |
10 | -2.724 | -2.531 | -2.247 | 1.322 |
11 | -3.581 | 1.228 | -1.172 | -1.396 |
12 | 1.304 | -3.444 | -1.313 | -4.275 |
13 | 0.153 | 0.274 | -0.876 | 0.098 |