Model info
| Transcription factor | Rxra | ||||||||
| Model | RXRA_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 22 | ||||||||
| Quality | C | ||||||||
| Consensus | dRddbhvdRAGKTCAAGGbSRb | ||||||||
| wAUC | 0.7491064014711164 | ||||||||
| Best AUC | 0.7811442288632731 | ||||||||
| Benchmark datasets | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B){2.1.3.1} | ||||||||
| MGI | 98214 | ||||||||
| EntrezGene | 20181 | ||||||||
| UniProt ID | RXRA_MOUSE | ||||||||
| UniProt AC | P28700 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 212.604 | 41.815 | 174.471 | 70.242 |
| 02 | 138.838 | 18.078 | 264.488 | 77.727 |
| 03 | 104.952 | 49.513 | 289.342 | 55.325 |
| 04 | 171.258 | 65.749 | 170.321 | 91.804 |
| 05 | 43.894 | 91.811 | 119.954 | 243.473 |
| 06 | 91.399 | 234.705 | 64.004 | 109.024 |
| 07 | 231.868 | 113.491 | 90.045 | 63.728 |
| 08 | 170.373 | 69.785 | 170.758 | 88.216 |
| 09 | 182.992 | 36.233 | 248.448 | 31.458 |
| 10 | 386.827 | 6.416 | 90.333 | 15.556 |
| 11 | 38.816 | 8.485 | 437.739 | 14.092 |
| 12 | 23.298 | 22.789 | 155.399 | 297.646 |
| 13 | 13.428 | 27.603 | 18.381 | 439.72 |
| 14 | 19.213 | 423.537 | 27.483 | 28.899 |
| 15 | 461.186 | 25.303 | 4.203 | 8.44 |
| 16 | 418.908 | 7.168 | 63.699 | 9.357 |
| 17 | 44.934 | 19.889 | 427.614 | 6.695 |
| 18 | 25.425 | 28.675 | 423.41 | 21.622 |
| 19 | 48.587 | 120.061 | 56.746 | 273.738 |
| 20 | 41.44 | 348.697 | 59.198 | 49.797 |
| 21 | 371.076 | 32.569 | 47.807 | 47.68 |
| 22 | 67.959 | 75.454 | 218.504 | 137.215 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.528 | -1.069 | 0.332 | -0.565 |
| 02 | 0.105 | -1.862 | 0.745 | -0.466 |
| 03 | -0.171 | -0.906 | 0.834 | -0.798 |
| 04 | 0.313 | -0.63 | 0.308 | -0.303 |
| 05 | -1.022 | -0.302 | -0.039 | 0.662 |
| 06 | -0.307 | 0.626 | -0.656 | -0.133 |
| 07 | 0.614 | -0.094 | -0.322 | -0.66 |
| 08 | 0.308 | -0.572 | 0.31 | -0.342 |
| 09 | 0.379 | -1.207 | 0.683 | -1.342 |
| 10 | 1.123 | -2.763 | -0.318 | -1.999 |
| 11 | -1.141 | -2.533 | 1.246 | -2.089 |
| 12 | -1.626 | -1.647 | 0.217 | 0.862 |
| 13 | -2.132 | -1.466 | -1.847 | 1.251 |
| 14 | -1.806 | 1.213 | -1.47 | -1.423 |
| 15 | 1.298 | -1.548 | -3.089 | -2.537 |
| 16 | 1.202 | -2.673 | -0.661 | -2.449 |
| 17 | -1.0 | -1.774 | 1.223 | -2.729 |
| 18 | -1.544 | -1.43 | 1.213 | -1.696 |
| 19 | -0.924 | -0.038 | -0.773 | 0.779 |
| 20 | -1.078 | 1.02 | -0.732 | -0.9 |
| 21 | 1.082 | -1.309 | -0.94 | -0.942 |
| 22 | -0.597 | -0.495 | 0.555 | 0.094 |