Model info
Transcription factorRxra
ModelRXRA_MOUSE.H10DI.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
OriginChIP-Seq
Model length23
Quality
B
ConsensusnvdvRGKKSARGGbSWbbbhnvd
wAUC
0.7654882691921001
Best AUC
0.8069879887626238
Benchmark datasets3
Aligned words507
TF familyRXR-related receptors (NR2){2.1.3}
TF subfamilyRetinoid X receptors (NR2B){2.1.3.1}
MGI98214
EntrezGene20181
UniProt IDRXRA_MOUSE
UniProt ACP28700
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.0531
0.0005 8.8851
0.0001 12.7661
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0127.69212.57853.2014.915115.63539.28712.36926.5225.84627.96847.8064.10512.49843.96720.61123.95
0257.95821.87891.24410.5965.64616.8556.85434.44628.70617.17359.17728.93110.3224.52620.47624.165
0354.53214.23187.3456.52432.83810.9038.3218.3759.47811.76495.96910.53916.96212.93962.3625.869
04108.110.048.1457.55629.3370.05.57814.921188.0181.96251.55112.46615.8810.94910.1944.279
057.3718.816309.8815.280.00.00.02.9116.621.01592.98214.852.5213.3225.9367.446
061.912.9417.9493.7120.05.9290.07.22227.88528.083145.447227.3821.0786.3879.61523.407
076.3653.77113.3427.3968.5813.582.49718.68312.7519.81734.55795.8876.65321.25921.412212.399
088.20213.45510.9051.78615.0338.0631.743.5944.51826.58236.0374.6711.763289.29920.4212.883
0925.3930.011.9842.135336.65618.4465.5586.74131.23116.74718.3982.72611.5633.6995.8281.843
10315.7556.13173.3969.5630.2260.9614.1943.5124.2320.87914.5552.1025.8651.1015.530.949
1117.351.07353.983.6794.0842.0051.841.1435.4720.088.1924.0110.00.014.3191.802
122.1071.80321.0721.9240.9610.02.1140.028.8774.933418.1726.351.740.06.0572.837
135.27411.75414.6472.011.943.9020.00.89445.58197.4787.917216.4480.9232.6511.6915.846
147.39328.16814.2923.8656.68987.2266.57415.28710.83451.63222.83918.9482.718181.66421.00219.815
1518.1422.3511.6715.471303.99210.53310.04324.12342.2244.19311.0227.26828.2924.98713.39411.242
1637.69361.099207.6486.2184.3468.834.9693.9184.5622.96121.7526.8550.9616.60827.99512.54
177.8117.1521.6790.92322.37335.1136.39715.61540.73885.14499.7836.6956.5548.72129.6324.63
1822.80517.17425.28712.20518.887120.04711.42935.76421.2457.11752.9926.1386.14640.44315.14716.127
1924.7717.4613.26713.58149.1925.2437.054153.29419.09920.9931.20333.5618.1426.08824.00532.002
2035.2487.24849.5059.19844.89.6874.68230.61222.7288.07421.51723.2136.95558.74888.15548.58
2136.48918.62673.26911.34750.36215.763.64313.99351.91224.1271.95515.8728.39916.76656.1930.245
2230.17114.74986.76615.47629.4913.8187.20524.75935.49929.028104.24836.28116.69221.18821.52612.05
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.117-0.890.529-1.7841.3020.228-0.906-0.16-0.185-0.1070.423-1.95-0.8960.34-0.408-0.26
020.614-0.3491.066-1.0560.738-0.605-1.4720.098-0.082-0.5870.635-0.074-1.081-1.86-0.414-0.251
030.554-0.771.022-1.5190.051-1.028-1.288-1.2820.64-0.9551.116-1.061-0.599-0.8620.687-1.618
041.234-4.3980.43-1.38-0.06-4.398-1.666-0.7241.786-2.5980.498-0.899-0.663-3.162-1.093-1.912
05-1.403-1.2332.285-0.701-4.398-4.398-4.398-2.259-1.505-3.1131.084-0.728-2.384-2.142-0.182-1.394
06-2.62-2.25-1.332-2.041-4.398-1.609-4.398-1.423-0.11-0.1031.531.976-3.069-1.539-1.149-0.283
07-1.542-2.027-0.833-1.4-1.259-0.815-2.393-0.504-0.877-0.4460.1021.115-1.5-0.377-0.371.908
08-1.302-0.824-1.028-2.676-0.7170.197-2.697-2.07-1.862-0.1580.143-1.831-0.9552.217-0.417-0.867
09-0.203-4.398-0.937-2.5272.368-0.517-1.67-1.4880.001-0.611-0.519-2.316-0.971-2.044-1.625-2.65
102.304-1.5770.849-1.155-0.031-3.153-1.93-2.092-0.249-3.215-0.748-2.54-1.619-3.054-1.674-3.162
11-0.577-3.0752.418-2.049-1.954-2.58-2.651-3.026-1.684-4.3981.032-1.971-4.398-4.398-0.764-2.668
12-2.538-2.668-0.386-2.614-3.153-4.398-2.535-4.398-0.076-1.7812.585-1.545-2.697-4.398-1.589-2.281
13-1.718-0.956-0.742-2.577-2.607-1.996-4.398-3.2030.3761.1311.0291.927-3.181-2.341-2.72-1.622
14-1.401-0.1-0.766-2.005-1.4951.021-1.512-0.7-1.0340.499-0.307-0.49-2.3191.752-0.389-0.446
15-0.533-2.445-2.73-1.6842.266-1.062-1.107-0.2530.3-1.93-1.018-1.417-0.096-1.77-0.829-0.999
160.1870.6671.8851.009-1.897-1.231-1.774-1.992-1.853-2.244-0.355-1.472-3.153-1.507-0.106-0.893
17-1.348-0.588-0.358-3.181-0.3270.117-1.537-0.6790.2640.9971.1550.161-1.5150.442-0.05-0.233
18-0.308-0.587-0.207-0.919-0.4931.339-0.9830.135-0.3780.60.525-0.174-1.5750.257-0.709-0.648
19-0.227-0.57-0.838-0.8150.451-0.208-1.4451.583-0.483-0.390.0010.073-1.309-0.176-0.2580.026
200.121-1.4190.458-1.1920.359-1.142-1.829-0.018-0.312-1.317-0.366-0.2910.1680.6281.0310.439
210.155-0.5070.847-0.990.475-0.67-2.058-0.7860.505-0.2530.829-0.664-1.279-0.610.583-0.03
22-0.033-0.7351.015-0.688-0.055-0.799-1.425-0.2280.128-0.0711.1980.15-0.614-0.381-0.365-0.932